CN189295

Overview
NameCN189295
Unique NameCN189295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = -1
Query:  356 GYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYH 664
            G ++ +G+  E++ TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA  P +G  +NPARS G A+      G   +W++WVGP VG GLA L +
Sbjct:  135 GISELEGVVFEVVITFALVYTVYATAADPKKGSLGT----IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGDFAG---NWVYWVGPLVGGGLAGLVY 231          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = -1
Query:  344 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 664
            G + G     EI  T   V  +F+  D +R+ R   V     L +GF++ L HL  +  TG G+NPARS   AI+    R + +HW++WVGP +G GLA+L +  ++
Sbjct:  124 GVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPIIGGGLASLLYDFLL 223          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: AQPZ_BORPA (Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = -1
Query:  347 YTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGW--DDHWIFWVGPFVGAGLAALYHQVV 661
            Y+    L  EI+ +   V+ +  ATD +  A        AP+PIG A+ L+HL +IP+T T +NPARS G A+      GW  +  W+FW+ P  GA + AL +++V
Sbjct:  132 YSMQAALICEIVLSAGFVFVILGATDKRAPAG------FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPALFVG---GWALEQLWLFWLAPIAGALVGALAYRLV 229          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: AQPZ_BORBR (Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = -1
Query:  347 YTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGW--DDHWIFWVGPFVGAGLAALYHQVV 661
            Y+    L  EI+ +   V+ +  ATD +  A        AP+PIG A+ L+HL +IP+T T +NPARS G A+      GW  +  W+FW+ P  GA + AL +++V
Sbjct:  132 YSMQAALICEIVLSAGFVFVILGATDKRAPAG------FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPALFVG---GWALEQLWLFWLAPIAGALVGALAYRLV 229          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.876e-12
Identity = 45/112 (40.18%), Postives = 62/112 (55.36%), Query Frame = -1
Query:  356 VVAHGYTKG----DGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYH 676
            V  HG   G    +G+  EI+ TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA  P +G  +NPARS G A++      +   WI+WVGP VG  LA L +
Sbjct:  128 VPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGT----IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVV---SGDFSQIWIYWVGPLVGGALAGLIY 232          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.876e-12
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  344 VAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAA-LYHQVVI 673
            VA G     G+  EII TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA  P +G  +NPARS G A++      +  +WI+W GP +G GLA  +Y  V I
Sbjct:  133 VAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGSLGT----IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAG---DFSQNWIYWAGPLIGGGLAGFIYGDVFI 237          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: AQPZ_CHRVO (Aquaporin Z OS=Chromobacterium violaceum GN=aqpZ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.876e-12
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = -1
Query:  347 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGW--DDHWIFWVGPFVGAGLAALYHQVV 664
            GY+    L  E++ T   +  +  ATD +  A        APL IG A+ L+HL +IP+T T +NPARS G A+      GW     W+FW+ P +GA L A  ++++
Sbjct:  126 GYSLLAALVCEVVMTMFFLLVIMGATDKRAPAG------FAPLAIGLALTLIHLISIPVTNTSVNPARSTGVALFVG---GWAVQQLWLFWLAPIIGAVLGAKVYRLI 224          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.451e-12
Identity = 38/107 (35.51%), Postives = 58/107 (54.21%), Query Frame = -1
Query:  344 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 664
            G + G     EI  T   V  +F+  D +R+ R   V     L +GF++ L HL  +  TG G+NPARS   AI+    R + +HW++WVGP +G GL +L +  ++
Sbjct:  122 GVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFSNHWVYWVGPIIGGGLGSLLYDFLL 221          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.451e-12
Identity = 38/107 (35.51%), Postives = 58/107 (54.21%), Query Frame = -1
Query:  344 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 664
            G + G     EI  T   V  +F+  D +R+ R   V     L +GF++ L HL  +  TG G+NPARS   AI+    R + +HW++WVGP +G GL +L +  ++
Sbjct:  124 GVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFSNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 45/112 (40.18%), Postives = 62/112 (55.36%), Query Frame = -1
Query:  356 VVAHGYTKG----DGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYH 676
            V  HG + G    +G+  EI+ TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA  P +G  +NPARS G A++          WI+WVGP VG  LA L +
Sbjct:  128 VPTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGSLGT----IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVV---SGDLSQIWIYWVGPLVGGALAGLIY 232          
The following BLAST results are available for this feature:
BLAST of CN189295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
TIP21_MAIZE1.437e-1240.38Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
MIP_RABIT1.437e-1236.45Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
AQPZ_BORPA1.437e-1237.38Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE... [more]
AQPZ_BORBR1.437e-1237.38Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ P... [more]
TIP22_ARATH1.876e-1240.18Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP1_TOBAC1.876e-1241.07Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
AQPZ_CHRVO1.876e-1236.11Aquaporin Z OS=Chromobacterium violaceum GN=aqpZ P... [more]
MIP_RAT2.451e-1235.51Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE2.451e-1235.51Lens fiber major intrinsic protein OS=Mus musculus... [more]
TIP23_ARATH3.201e-1240.18Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189295 ID=CN189295; Name=CN189295; organism=Citrus sinensis; type=EST; length=676bp
TTTTTTTTTTTTTTTTTAAAGAACTAGTTTTGTCCATATTATTACCAAGA
TGACATTGCACAAATCCATAGCCATACAAATGTACAAAGTGACAGCGCCC
ACCTACTTAACCATGGGCCCATCCGTCATCATCATCCACCTCTCTTCAAA
ATTAAAAAAAAAAAAAACGTTTTAAGGAAGGAAAACAGAAAAGCAGGCCC
AGGTCCAGCACCAGCAGATTTGAACAAAGGACTAATTAATATTTTATAAT
ACACATAAGCAAACCAGCAACAGCCATAAACAAATGCAGGTGCAATCACG
AACGTTGATGAAGCGATCAGCTTCATTTGAAGGGAATGGCTCTGATCACG
ACTTGGTGGTACAAAGCTGCGAGTCCAGCTCCAACGAATGGTCCCACCCA
AAAAATCCAGTGGTCATCCCAACCGCGGTCCTTGTTGTAAATGATTGCAG
CTCCAAGACTCCTCGCTGGGTTGATGCCAGTTCCGGTAATTGGGATAGTG
GCCAAGTGAACCAAAAACACAGCGAACCCAATTGGCAGAGGAGCCAAAAT
AGGAACATGAGAGTCCCTGGCGCTCCGTTTGGCATCAGTGGCAGAAAAAA
CTGTGTAGACAAGAACAAAAGTACCAATAATCTCGGCACCAAGACCATCA
CCCTTGGTGTAGCCATGAGCTACAAC
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