CN189292

Overview
NameCN189292
Unique NameCN189292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_NITEC (Aminomethyltransferase OS=Nitrosomonas eutropha (strain C91) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.569e-14
Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPI--GEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM++   P+E+GL W +    ++E  F+G + +L++      V  V    G    R+H K+  +       GEITSGGFSP L ++IA+  +  G+  AG +V + VR K     + K PFV
Sbjct:  227 TLRLEAGMNLYGQDMDETTNPLESGLAWTVD--LKSERDFIGKQALLEKPVNQQLVGLVLLDKG--VLRNHQKIITQHEGIAGEGEITSGGFSPTLNQSIALARIPVGI-AAGEQVHVVVRDKQLAARVVKYPFV 356          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_CHLP8 (Aminomethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.569e-14
Identity = 46/134 (34.33%), Postives = 73/134 (54.48%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPA-RSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLE G  LYG++++Q V P+EA L W +   +  +  F+G ++  +Q++  P    VGF   G    R H KV++     IGE+ SG  SP L++ I    +     K GT + +E+RG    G + ++PFV
Sbjct:  231 TLRLEMGYSLYGHEIDQTVNPLEARLKWVV---KMDKPNFIG-KQACQQVELDPRKSVVGFSLDGRAIPRQHFKVYNSDKQEIGEVCSGTVSPTLQEPIGTASLLRDYAKTGTPIFVEIRGTFQPGTVRRLPFV 360          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BACSK (Aminomethyltransferase OS=Bacillus clausii (strain KSM-K16) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.569e-14
Identity = 45/134 (33.58%), Postives = 75/134 (55.97%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LR EA L LYG ++ + ++P+EAG+ +A+   ++A   F+G + + KQ ++GP  + VG      G P   +   +  QG  +G +TSG  SP L KN+ +   K+      T++++EVRGK     + K PF
Sbjct:  233 TLRFEARLPLYGQELTKDISPIEAGIGFAVKTDKQA--AFIGQQALKKQKEQGPSRKLVGIEMVDRGIPRTGYRVFY--QGQDVGFVTSGTQSPTLGKNVGLVLAKADAAAIDTELEVEVRGKRLRARVVKTPF 362          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_COXBU (Aminomethyltransferase OS=Coxiella burnetii GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 56/135 (41.48%), Postives = 71/135 (52.59%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPP-ARSHSKVH-DEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAGL LYG DM++  +P+ + L+W +     A+  F+G   + KQLDE    R +G     P   R+H KV   E G   G ITSGGFSP L   IA+  V  G      K  +E RGK     I K PFV
Sbjct:  228 TLRLEAGLNLYGTDMDETTSPLISNLSWTV-SWNDADRNFIGRRALEKQLDENVKERLIGLVMEEPGILRNHQKVWLTEDGE--GIITSGGFSPTLGHAIALARVPVG---EVEKATVERRGKKIPVKIIKPPFV 356          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_FRAAA (Aminomethyltransferase OS=Frankia alni (strain ACN14a) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.793e-14
Identity = 47/136 (34.56%), Postives = 71/136 (52.21%), Query Frame = -2
Query:  190 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPA-RSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPT 594
            +LR E G  L+G D+   +TPV+A   WA+G  +     F G E +L +   GP     G  + G    R H  V    G P+GE+TSG FSP L++ I +  +  G+ + G  V ++VRG+     + + PFVP+
Sbjct:  231 TLRTEMGYPLHGQDLSPTITPVQARSGWAVGWGKER---FWGREALLAERAAGPARLLWGLASTGRAIPRPHMPVTAADGAPVGEVTSGTFSPTLRQGIGLALLDRGVAE-GDTVNVDVRGRPGPMTVVRPPFVPS 362          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BACP2 (Aminomethyltransferase OS=Bacillus pumilus (strain SAFR-032) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.793e-14
Identity = 46/134 (34.33%), Postives = 73/134 (54.48%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LR EA L LYG ++ + ++P+E G+ +A+  +   E  F+G E + KQ +EGP  + VG      G P   +     E+   IG +T+G  SP LKKN+ +  ++S   + GT V+++VR K     I   PF
Sbjct:  231 TLRFEARLPLYGQELTKDISPLEGGIGFAV--KTDKEANFIGKEALKKQKEEGPKRKLVGIEMIDKGIPRTDYPVFSGEK--QIGVVTTGTQSPTLKKNVGLALIESSQAQLGTVVEVQVRKKRLKAKIVATPF 360          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_THELT (Aminomethyltransferase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=gcvT PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.018e-13
Identity = 42/130 (32.31%), Postives = 69/130 (53.08%), Query Frame = -2
Query:  199 RLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 588
            RLEA   LYGNDM++  TP+E GL+W +    + +  F+G + ++KQ + G   R  G          H     +    +G +TSG FSP L+K +A+  + S + K   ++++++RG      I K+PF
Sbjct:  230 RLEASYMLYGNDMDETTTPLEVGLSWVV----KFDKDFIGKDSLIKQKELGLQKRIRGLEISDRRIARHGMYVFKGEKRVGVVTSGTFSPTLEKPVALAMLSSEI-KISDEIEVDIRGSKVKAMIVKLPF 354          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_PSEPK (Aminomethyltransferase OS=Pseudomonas putida (strain KT2440) GN=gcvT PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.018e-13
Identity = 48/133 (36.09%), Postives = 71/133 (53.38%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG D++++ TP+ + L W+I     AE  F+G   +L +++ G   + VG            +V    G   GEITSG FSP L K+IA+  V       G + ++E+RGK Y   + K  FV
Sbjct:  225 TLRLEAGMNLYGQDIDENHTPLTSNLGWSIA-WEPAERNFIGRVGLLAEIEHGVQEKLVGLVLEERGVLRAHQVVRVAGIGEGEITSGSFSPTLSKSIALARVPMA---TGDRAEVEIRGKWYPVRVVKPTFV 353          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BACCQ (Aminomethyltransferase OS=Bacillus cereus (strain Q1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.018e-13
Identity = 53/143 (37.06%), Postives = 77/143 (53.85%), Query Frame = -2
Query:  172 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 594
            +LR EA L LYG ++ + +TPVEAG+ +A+   + A+  F G   + +Q + G P + VG      G P R+H  V   +   IGE+TSG  SP LKK+I +  +        T+V+IE+R K       K   VPT +YK S
Sbjct:  232 TLRFEATLPLYGQELSKDITPVEAGIGFAVKPNKEAD--FFGKATLKEQKENGAPRKLVGIEVIERGIP-RTHYPVFIGE-EKIGEVTSGTQSPTLKKSIGLALIDVKYAAVDTEVEIEIRNKR-----VKAVVVPTPFYKRS 365          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BACC7 (Aminomethyltransferase OS=Bacillus cereus (strain AH187) GN=gcvT PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.018e-13
Identity = 53/143 (37.06%), Postives = 77/143 (53.85%), Query Frame = -2
Query:  172 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 594
            +LR EA L LYG ++ + +TPVEAG+ +A+   + A+  F G   + +Q + G P + VG      G P R+H  V   +   IGE+TSG  SP LKK+I +  +        T+V+IE+R K       K   VPT +YK S
Sbjct:  232 TLRFEATLPLYGQELSKDITPVEAGIGFAVKPNKEAD--FFGKATLKEQKENGAPRKLVGIEVIERGIP-RTHYPVFIGE-EKIGEVTSGTQSPTLKKSIGLALIDVKYAAVDTEVEIEIRNKR-----VKAVVVPTPFYKRS 365          
The following BLAST results are available for this feature:
BLAST of CN189292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
GCST_NITEC4.569e-1437.04Aminomethyltransferase OS=Nitrosomonas eutropha (s... [more]
GCST_CHLP84.569e-1434.33Aminomethyltransferase OS=Chlorobaculum parvum (st... [more]
GCST_BACSK4.569e-1433.58Aminomethyltransferase OS=Bacillus clausii (strain... [more]
GCST_COXBU5.967e-1441.48Aminomethyltransferase OS=Coxiella burnetii GN=gcv... [more]
GCST_FRAAA7.793e-1434.56Aminomethyltransferase OS=Frankia alni (strain ACN... [more]
GCST_BACP27.793e-1434.33Aminomethyltransferase OS=Bacillus pumilus (strain... [more]
GCST_THELT1.018e-1332.31Aminomethyltransferase OS=Thermotoga lettingae (st... [more]
GCST_PSEPK1.018e-1336.09Aminomethyltransferase OS=Pseudomonas putida (stra... [more]
GCST_BACCQ1.018e-1337.06Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACC71.018e-1337.06Aminomethyltransferase OS=Bacillus cereus (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189292 ID=CN189292; Name=CN189292; organism=Citrus sinensis; type=EST; length=595bp
GAGGGCTTTAAAGTAAACACTTTTATTCAGGCAACAAGAATCATAAGAAT
TTGCAGAATTAAAGAACTGCTAGCAATAAAGACAGTAATCTCGAGCAGTC
AATGTTTATGAAACAAGTCAAAACAGGAATCGAGTAGAGCTTCCATAAGC
AGAACCAACAAAGATGTACTAAGACGGCTTGTAGTATTTTGTTGGCACAA
ATGGCATTTTAGTGATGTTTCCATCGTAGGCTTTTCCTCGAACCTCAATC
TTAACTTTTGTGCCTGCCTTGTGCAATCCAGATTTTACATATCCCATGGC
TATATTCTTCTTGAGGCAGGGGCTGAATCCTCCACTGGTAATTTCTCCAA
TGGGATTCCCTTGCTCATCGTGAACCTTACTGTGTGATCTGGCAGGCGGA
CCTCCAGCGAAGAATCCAACACGTCTGACTGGCGGACCTTCGTCAAGTTG
TTTGAGTATTTTCTCAGCACCTAGAAAGCCACCTTCTGCTCTCCTCCTCT
TTCCTATGGCCCATGTCAGTCCAGCTTCTACAGGTGTCACGTGTTGTTCC
ATGTCATTACCATATAAACATAAGCCAGCTTCAAGTCGGAGACTG
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