CN189287

Overview
NameCN189287
Unique NameCN189287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189287 vs. ExPASy Swiss-Prot
Match: CP3AD_MOUSE (Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13
Identity = 46/161 (28.57%), Postives = 80/161 (49.69%), Query Frame = -2
Query:  176 AGADTTSNTLEWAMTELLCNPEALSKTRMELEQTVGKGNSIDESDIIRLPYLQAVVKETFRLHXXXXXXXPRKASTNTQVAGYTIPKDALVLVNVWAIGRDEGIWESPCSFMPERFLGSEIDVKGRNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSF 658
            AG +TTS+ L +A+  L  +P+   K + E++  +          ++++ YL  VV ET RL+        R   T+ ++ G  IPK  +V++  +A+ +D   W  P  F PERF     D     +  +PFG+G R C G+  A+  + + L  ++ +F
Sbjct:  305 AGYETTSSALSFALYLLAIHPDVQKKLQDEIDAALPNKAPATYDTLLQMEYLDMVVNETLRLYPIAGRLE-RVCKTDVEINGLFIPKGTVVMIPTFALHKDPKYWPEPEEFRPERFSKKNQD-SINPYMYLPFGSGPRNCIGMRFALINMKVALVRVLQNF 463          
BLAST of CN189287 vs. ExPASy Swiss-Prot
Match: CP2F2_RAT (Cytochrome P450 2F2 OS=Rattus norvegicus GN=Cyp2f2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13
Identity = 48/165 (29.09%), Postives = 79/165 (47.88%), Query Frame = -2
Query:  176 DLFAAGADTTSNTLEWAMTELLCNPEALSKTRMELEQTVGKGNSIDESDIIRLPYLQAVVKETFRLHXXXXXXXPRKASTNTQVAGYTIPKDALVLVNVWAIGRDEGIWESPCSFMPERFLGSEIDVKGRNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSF 670
            +L   G +T   TL  A   L+  P+  ++ + E++  VG+       D   +PY  AV+ E  R         P +   +T   G+ IPK   V+  +  +  D   +++P  F PE FL +    K ++   +PF AGRR+C G PLA   L++ L S++ +F
Sbjct:  294 NLLFGGTETVGTTLRHAFLILMKYPKVQARVQEEIDCVVGRSRMPTLEDRASMPYTDAVIHEVQRFADVIPMNLPHRVIRDTPFRGFLIPKGTDVITLLNTVHYDSDQFKTPQEFNPEHFLDANQSFK-KSPAFMPFSAGRRLCLGEPLARMELFIYLTSILQNF 457          
BLAST of CN189287 vs. ExPASy Swiss-Prot
Match: CP2B3_RAT (Cytochrome P450 2B3 OS=Rattus norvegicus GN=Cyp2b3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13
Identity = 55/198 (27.78%), Postives = 94/198 (47.47%), Query Frame = -2
Query:   80 LDLFAAGADTTSNTLEWAMTELLCNPEALSKTRMELEQTVGKGNSIDESDIIRLPYLQAVVKETFRLHXXXXXXXPRKASTNTQVAGYTIPKDALVLVNVWAIGRDEGIWESPCSFMPERFLGSEIDVKGRNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKFEDGITQHNMDMEEKFGLTLNKAQPLHAI 673
            L LF AG ++TSNTL +    +L  P    K + E++Q +G        D  ++PY +AV+ E  R         P + + +T   GY +PK+  V   + +   D   +E P +F PE FL +   +K +    +PF  G+R+C G  +A   L+L   +++ ++       +  + +DM  K    L K  P++ I
Sbjct:  293 LFLFLAGTESTSNTLCYGFLLMLKYPHVAEKVQKEIDQVIGSQRVPTLDDRSKMPYTEAVIHEIQRFSDVSPMGLPCRITKDTLFRGYLLPKNTEVYFILSSALHDPQYFEQPDTFNPEHFLDANGALK-KCEAFMPFSIGKRMCLGEGIARSELFLFFTTILQNY--SVSSPVDPNTIDMTPKES-GLAKVAPVYKI 486          
BLAST of CN189287 vs. ExPASy Swiss-Prot
Match: CP11A_SHEEP (Cholesterol side-chain cleavage enzyme, mitochondrial OS=Ovis aries GN=CYP11A1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13
Identity = 57/203 (28.08%), Postives = 93/203 (45.81%), Query Frame = -2
Query:   80 IKHLFLDLFAAGADTTSNTLEWAMTELLCNPEALSKTRMELEQTVGKGNSIDESDIIRLPYLQAVVKETFRLHXXXXXXXPRKASTNTQVAGYTIPKDALVLVNVWAIGRDEGIWESPCSFMPERFLGSEIDVKGRNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKFEDGITQHNMDMEEKFGLTLNKAQPLHAI 688
            +K    ++ A G DTTS TL+W + E+  +       R E+     +        +  +P L+A +KET RLH        R   ++  +  Y IP   LV V ++A+GRD   + +P  F P R+LG + D+   +F  + FG G R C G  +A   + L L  ++ +F  +      Q   D+   F L L   +P+  +
Sbjct:  315 VKANITEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLRKEVLNARRQAEGDISKMLQMVPLLKASIKETLRLH-PISVTLQRYPESDLVLQDYLIPAKTLVQVAIYAMGRDPAFFSNPDKFDPTRWLGKDKDL--IHFRNLGFGWGVRQCVGRRIAELEMTLFLIHILENFRVEM-----QQIGDVNTIFNLILTPDKPIFLV 509          
BLAST of CN189287 vs. ExPASy Swiss-Prot
Match: C97B1_PEA (Cytochrome P450 97B1 OS=Pisum sativum GN=CYP97B1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13
Identity = 53/196 (27.04%), Postives = 87/196 (44.39%), Query Frame = -2
Query:  218 DDKSVEIDRNYIKHLFLDLFAAGADTTSNTLEWAMTELLCNPEALSKTRMELEQTVGKGNSIDESDIIRLPYLQAVVKETFRLHXXXXXXXPRKASTNT-------QVAGYTIPKDALVLVNVWAIGRDEGIWESPCSFMPERFL--GSEIDVKG-------------------RNFELIPFGAGRRICPGLPLAI 721
            D + V++D   ++   + +  AG +TT+  L WA+  L  NP+ + K + E++  +G G    E  + +L Y++ +V ET RL+        R    +           GYTIP    V ++V+ + R    W+ P  F PERFL   +  +V+G                    +F  +PFG G R C G   A+
Sbjct:  341 DMRGVDVDDRQLRDDLMTMLIAGHETTAAVLTWAVFLLAQNPDKMKKAQAEVDLVLGMGKPTFEL-LKKLEYIRLIVVETLRLYPQPPLLIRRSLKPDVLPGGHKGDKDGYTIPAGTDVFISVYNLHRSPYFWDRPNDFEPERFLVQNNNEEVEGWAGFDPSRSPGALYPNEIISDFAFLPFGGGPRKCVGDQFAL 535          
BLAST of CN189287 vs. ExPASy Swiss-Prot
Match: THAS_MOUSE (Thromboxane-A synthase OS=Mus musculus GN=Tbxas1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 55/184 (29.89%), Postives = 95/184 (51.63%), Query Frame = -2
Query:  113 AGADTTSNTLEWAMTELLCNPEALSKTRMELEQTVGKGNSIDESDIIR-LPYLQAVVKETFRLHXXXXXXXPRKASTNTQVAGYTIPKDALVLVNVWAIGRDEGIWESPCSFMPERFLGSEIDVKGRNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKFE-DGITQHNMDMEEKFGL 658
            AG +  +NTL +    L  +P+   +   E++  +GK  + +   +   LPYL  V+ ET R++        R+A+ + +V G  IP   ++ + V A+  D   W +P +F PERF  +E  ++ R F  +PFGAG R C G+ L + ++ L +  +++ F  +FE    TQ  + +E K  L
Sbjct:  341 AGHEVITNTLSFITYLLATHPDCQERLLKEVDLFMGKHPAPEYHSLQEGLPYLDMVISETLRMYPPAFRFT-REAAQDCEVLGQRIPAGTVLEIAVGALHHDPEHWPNPETFDPERFT-AEARLQRRPFTYLPFGAGPRSCLGVRLGLLVVKLTILQVLHKF--RFEASPETQVPLQLESKSAL 520          
BLAST of CN189287 vs. ExPASy Swiss-Prot
Match: THAS_BOVIN (Thromboxane-A synthase OS=Bos taurus GN=TBXAS1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 63/188 (33.51%), Postives = 91/188 (48.40%), Query Frame = -2
Query:  113 AGADTTSNTLEWAMTELLCNPEALSKTRMEL-----EQTVGKGNSIDESDIIRLPYLQAVVKETFRLHXXXXXXXPRKASTNTQVAGYTIPKDALVLVNVWAIGRDEGIWESPCSFMPERFLGSEIDVKGRNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKFED-GITQHNMDMEEKFGL 658
            AG +  +NTL +A   L  NPE   K   E+     E    +  S+ E     LPYL  V+KET R++        R A+ + +V G  IP  A++   V A+  D   W +P +F PERF  +E   + R +  +PFGAG R C G+ L +  L L L  ++  F  +FE    TQ  + +E K  L
Sbjct:  341 AGYEIVTNTLSFATYLLATNPECQEKLLEEVDCFSKEHLAPEYCSLQEG----LPYLDMVIKETLRMYPPAFRFT-RVAAQDCEVLGQRIPAGAVLETAVGALHYDPEHWPNPENFNPERFT-AEAQQRRRPYTYLPFGAGPRSCLGVRLGLLELKLTLLHILRKF--RFEACPETQVPLQLESKSAL 520          
BLAST of CN189287 vs. ExPASy Swiss-Prot
Match: CP2F5_GORGO (Cytochrome P450 2F5 OS=Gorilla gorilla gorilla GN=CYP2F5 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 51/188 (27.13%), Postives = 86/188 (45.74%), Query Frame = -2
Query:  176 KSVEIDRNYIKHLFLD--------LFAAGADTTSNTLEWAMTELLCNPEALSKTRMELEQTVGKGNSIDESDIIRLPYLQAVVKETFRLHXXXXXXXPRKASTNTQVAGYTIPKDALVLVNVWAIGRDEGIWESPCSFMPERFLGSEIDVKGRNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSF 715
            K  E + + + H  +D        L   G +T   TL +A   L+  P+  ++ + E++  VG+       D   +PY  AV+ E  R         P + + +T   G+ IPK   ++  +  +  D   + +P  F PE FL +    K ++   +PF AGRR+C G  LA   L+L L +++ SF
Sbjct:  271 KMAEENEDPLSHFHMDTLLMTTHNLLFGGTETVGTTLRYAFLALMKYPKVQARVQEEIDLVVGRARLPALKDRAAMPYTDAVIHEVQRFADIIPMSLPHRVTRDTAFRGFLIPKGTDIITLLNTVHYDPSQFLTPQEFNPEHFLDANQSFK-KSPAFMPFSAGRRLCLGESLARMELFLYLTAILQSF 457          
BLAST of CN189287 vs. ExPASy Swiss-Prot
Match: CP11A_MOUSE (Cholesterol side-chain cleavage enzyme, mitochondrial OS=Mus musculus GN=Cyp11a1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 58/194 (29.90%), Postives = 90/194 (46.39%), Query Frame = -2
Query:   89 DLFAAGADTTSNTLEWAMTELLCNPEALSKTRMELEQTVGKGNSIDESDIIRLPYLQAVVKETFRLHXXXXXXXPRKASTNTQVAGYTIPKDALVLVNVWAIGRDEGIWESPCSFMPERFLGSEIDVKGRNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKFEDGITQHNMDMEEKFGLTLNKAQPL 670
            ++ A G DTTS TL+W + E+  N +     R E+     +        +  +P L+A +KET RLH        R    +  +  Y IP   LV V  +A+GRD G + +P  F P R+L  E      +F  + FG G R C G  +A   + ++L +L+ +F  +      Q+  D+  KF L L    P+
Sbjct:  318 EMLAGGVDTTSMTLQWNLYEMAHNLKVQEMLRAEVLAARRQAQGDMAKMVQLVPLLKASIKETLRLH-PISVTLQRYTVNDLVLRNYKIPAKTLVQVASFAMGRDPGFFPNPNKFDPTRWL--EKSQNTTHFRYLGFGWGVRQCLGRRIAELEMTILLINLLENFRIE-----VQNLRDVGTKFSLILMPENPI 503          
BLAST of CN189287 vs. ExPASy Swiss-Prot
Match: CCD1P_DROME (Probable cytochrome P450 12d1 proximal, mitochondrial OS=Drosophila melanogaster GN=Cyp12d1-p PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 54/191 (28.27%), Postives = 94/191 (49.21%), Query Frame = -2
Query:  164 DKSVEIDRNYIKHLFLDLFAAGADTTSNTLEWAMTELLCNPEALSKTRMELEQTVG-KGNSIDESDIIRLPYLQAVVKETFRLHXXXXXXXPRKASTNTQVAGYTIPKDALVLVNVWAIGRDEGIWESPCSFMPERFL-----GSEIDVKGRNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKF 718
            ++ +EID      + LD+  AG D T+  L   +  L  +P+  +K R EL   +  K + ++E ++  +PYL+AV+KET R +        R    +  ++GY +PK   VL+    + ++   +  P  F+PER+L     G ++ V    F  +PFG G R+C G  +    +   +  LI +F  +F
Sbjct:  305 ERLMEIDPKVAVIMSLDILFAGVDATATLLSAVLLCLSKHPDKQAKLREELLSIMPTKDSLLNEENMKDMPYLRAVIKETLRYYPNGLGTM-RTCQNDVILSGYRVPKGTTVLLGSNVLMKEATYYPRPDEFLPERWLRDPETGKKMQVS--PFTFLPFGFGPRMCIGKRVVDLEMETTVAKLIRNFHVEF 492          
The following BLAST results are available for this feature:
BLAST of CN189287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CP3AD_MOUSE1.901e-1328.57Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE... [more]
CP2F2_RAT1.901e-1329.09Cytochrome P450 2F2 OS=Rattus norvegicus GN=Cyp2f2... [more]
CP2B3_RAT1.901e-1327.78Cytochrome P450 2B3 OS=Rattus norvegicus GN=Cyp2b3... [more]
CP11A_SHEEP1.901e-1328.08Cholesterol side-chain cleavage enzyme, mitochondr... [more]
C97B1_PEA1.901e-1327.04Cytochrome P450 97B1 OS=Pisum sativum GN=CYP97B1 P... [more]
THAS_MOUSE2.483e-1329.89Thromboxane-A synthase OS=Mus musculus GN=Tbxas1 P... [more]
THAS_BOVIN2.483e-1333.51Thromboxane-A synthase OS=Bos taurus GN=TBXAS1 PE=... [more]
CP2F5_GORGO2.483e-1327.13Cytochrome P450 2F5 OS=Gorilla gorilla gorilla GN=... [more]
CP11A_MOUSE2.483e-1329.90Cholesterol side-chain cleavage enzyme, mitochondr... [more]
CCD1P_DROME2.483e-1328.27Probable cytochrome P450 12d1 proximal, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189287 ID=CN189287; Name=CN189287; organism=Citrus sinensis; type=EST; length=722bp
AGCCCTTGGCTATAACCTTATTCCGTCATTGTGGTACATAAAAGACTAAA
CTATATGTTACTACTTAAATGGCAATAGGGATTGCATGAAGTGGCTGAGC
CTTATTTAAGGTGAGACCAAACTTCTCTTCCATGTCCATGTTATGTTGAG
TAATTCCATCTTCAAATTTCCAATCAAAGGAATTAATAAGTGAACCCAAC
ATTAGATATAACATTCTTATAGCCAACGGCAAACCAGGACATATTCGTCG
TCCAGCACCAAATGGTATTAACTCAAAATTCCGGCCTTTGACATCAATCT
CCGACCCCAAGAATCTCTCGGGCATGAAAGAACAAGGGCTCTCCCATATG
CCTTCATCCCTGCCAATAGCCCATACATTAACTAAAACTAGGGCATCCTT
TGGTATTGTATAGCCTGCGACTTGTGTGTTTGTTGAGGCTTTGCGTGGAA
GTAACAAGGGAGCTGCTGGGTGCAACCTAAAAGTTTCTTTGACTACTGCT
TGTAGATAAGGCAGCCGAATGATGTCTGATTCGTCAATCGAGTTCCCTTT
GCCAACTGTTTGTTCTAGCTCCATTCTAGTTTTGGATAAAGCCTCTGGGT
TGCAGAGTAGTTCAGTCATTGCCCATTCCAATGTGTTCGAAGTTGTATCA
GCACCCGCCGCAAACAAATCAAGAAACAAATGCTTGATATAATTTCTATC
AATCTCCACGCTCTTGTCATCC
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