CN189273

Overview
NameCN189273
Unique NameCN189273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.058e-23
Identity = 65/165 (39.39%), Postives = 95/165 (57.58%), Query Frame = 2
Query:  194 FARFARRYGKIYESVEEMKLRFATFSKNL---DLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAA---QNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYI 670
            + +F  +Y K Y   E+ ++RF  F  N+    L +   R    Y  G+  ++D + +EF R  L A+    +  + T  +     + +P+  DWRE G V+ VK+QG CGSCW FSTTG++E+ + +  GK +SLSEQQLVDC     + GCNGGLPS A+E I
Sbjct:   20 YVQFKLKYRKQYHETED-EIRFNIFKSNILKAQLYQVFVRGSAIY--GVTPYSDLTTDEFARTHLTASWVVPSSRSNTPTSLGKEVNNIPKNFDWREKGAVTEVKNQGMCGSCWAFSTTGNVESQWFRKTGKLLSLSEQQLVDCDGL--DDGCNGGLPSNAYESI 179          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.216e-23
Identity = 65/163 (39.88%), Postives = 90/163 (55.21%), Query Frame = 2
Query:  209 RRYGKIYESVEEMKLRFATFSKNLDLIRSTNRK---GL-SYRLGLNKFADWSWEE----FQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA-QAFNNQGCNGGLPSQAFEYI 670
            + YGK Y+   E  +R   + KNL  +   N +   G+ SY LG+N   D + EE        R+ +    + T K N      +LP++ DWRE G V+ VK QG CG+CW FS  G+LEA      GK +SLS Q LVDC+ + + N+GCNGG  + AF+YI
Sbjct:   33 KTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVMSLMSSLRVPSQWQRNITYKSNPNR---ILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 192          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CATV_NPVHZ (Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.813e-23
Identity = 67/174 (38.51%), Postives = 93/174 (53.45%), Query Frame = 2
Query:  194 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGL------------SYRLGLNKFADWSWEEFQRHRLGAAQNCSA--TTKGNH--KLTADV-LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFE 664
            F  F ++Y K Y+  +E + R+  F  NL+ I S NR+ L            S + G+NKF+D + +E      G   N S   T   N   K   D+ LP+  DWR++  V+P+KDQG CGSCW F   G++E+ Y     K I LSEQQL+DC +   + GCNGGL   AF+
Sbjct:   57 FKHFLQQYNKSYDDPKEYQYRYNVFKDNLNKINSQNRENLLNNKNNNDSLSTSAQFGVNKFSDKTPDEVLHSNTGFFLNLSQHYTLCENRIVKGAPDIRLPDYYDWRDTNKVTPIKDQGVCGSCWAFVAIGNIESQYAIRHNKLIDLSEQQLLDCDEV--DLGCNGGLMHLAFQ 228          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.813e-23
Identity = 58/157 (36.94%), Postives = 87/157 (55.41%), Query Frame = 2
Query:  212 RYGKIYESVEEMKLRFATFSKNLDLIRSTNRK-GLS---YRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYI 670
            +Y K Y  VEE +L+ A + +NL +I+  N++ GL    + + +N FAD + EEF++         + T     K  +  LP  KDWR+ G V+PV++QG CGSCW F+  G++E       G    LS Q L+DC+++  N GC  G   QAF Y+
Sbjct:   35 KYAKSYSPVEE-ELKRAVWEENLKMIQLHNKENGLGKNGFTMEMNAFADTTGEEFRKSLSDILIPAAVTNPSAQKQVSIGLPNFKDWRKEGYVTPVRNQGKCGSCWAFAAVGAIEGQMFSKTGNLTPLSVQNLLDCSKSEGNNGCRWGTAHQAFNYV 190          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: PAPA4_CARPA (Papaya proteinase 4 OS=Carica papaya PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 8.898e-23
Identity = 60/162 (37.04%), Postives = 90/162 (55.56%), Query Frame = 2
Query:  194 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAA-QNCSATTKGNHKLTADV--LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYI 670
            F  +  ++ K Y++V+E   RF  F  NL  I   N+    Y LGLN+F+D S +EF+   +G+  ++ +        +  D+  LPE+ DWR  G V+PVK QG+C SCW FST  ++E       G  + LSEQ+LVDC +   + GCN G  S + +Y+
Sbjct:   48 FNSWMLKHNKNYKNVDEKLYRFEIFKDNLKYIDERNKMINGYWLGLNEFSDLSNDEFKEKYVGSLPEDYTNQPYDEEFVNEDIVDLPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDK--QSYGCNRGYQSTSLQYV 207          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 8.898e-23
Identity = 69/195 (35.38%), Postives = 102/195 (52.31%), Query Frame = 2
Query:  110 IRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYES--VEEMKLRFATFSKNLDLIRSTNRKGLS---YRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGN--HKLTADVLPETKDWRESG-IVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYI 670
            IR  +  G+R  E +  +   +A + L  AR  R  G    +  + E + RF  F  NL  + + N +      +RLG+N+FAD +  EF+   LG          G        + LP++ DWR+ G +V+PVK+QG CGSCW FS   ++E       G+ +SLSEQ+LV+CA+   N GCNGG+   AF +I
Sbjct:   40 IRYNAEHGVRGLERTEAEA--RAAYDLWLARHRRGGGGGSRNGFIGEHERRFRVFWDNLKFVDAHNARADERGGFRLGMNRFADLTNGEFRATYLGTTPAGRGRRVGEAYRHDGVEALPDSVDWRDKGAVVAPVKNQGQCGSCWAFSAVAAVEGINKIVTGELVSLSEQELVECARNGQNSGCNGGIMDDAFAFI 232          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.162e-22
Identity = 69/179 (38.55%), Postives = 92/179 (51.40%), Query Frame = 2
Query:  194 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYR----LGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVL--------PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDC--------AQAFNNQGCNGGLPSQAFEYI 670
            F  F  ++ K Y S EE   RF  F  NL  I   N   ++++     G+NKFAD S +EF+ + L    N       +    AD L        P   DWR  G V+PVK+QG CGSCW+FSTTG++E  +  +  K +SLSEQ LVDC         +   ++GCNGGL   A+ YI
Sbjct:   29 FLEFQDKFNKKY-SHEEYLERFEIFKSNLGKIEELNLIAINHKADTKFGVNKFADLSSDEFKNYYL----NNKEAIFTDDLPVADYLDDEFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEGCNGGLQPNAYNYI 202          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.162e-22
Identity = 66/163 (40.49%), Postives = 89/163 (54.60%), Query Frame = 2
Query:  209 RRYGKIYESVEEMKLRFATFSKNLDLIRSTNRK---GL-SYRLGLNKFADWSWEE----FQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQA-FNNQGCNGGLPSQAFEYI 670
            + YGK Y+   E   R   + KNL  +   N +   G+ SY LG+N   D + EE        R+ +    + T K +       LP++ DWRE G V+ VK QG CGSCW FS  G+LEA      GK +SLS Q LVDC+ A + N+GCNGG  ++AF+YI
Sbjct:   33 KTYGKQYKEKNEEVARRLIWEKNLKTVTLHNLEHSMGMHSYELGMNHLGDMTSEEVISLMSSLRVPSQWPRNVTYKSDPN---QKLPDSMDWREKGCVTEVKYQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDCSTAKYGNKGCNGGFMTEAFQYI 192          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.162e-22
Identity = 64/164 (39.02%), Postives = 87/164 (53.05%), Query Frame = 2
Query:  194 FARFARRYGKIYESVEEMKLRFATFSKNL---DLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNH-KLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIK 673
            F  F   Y + YES EE + R + F  N+     I++ +R    Y  G+ KF+D + EEF+   L          K    K   D+ P   DWR  G V+ VKDQG CGSCW FS TG++E  +    G  +SLSEQ+L+DC +   ++ C GGLPS A+  IK
Sbjct:  187 FKNFVITYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRGTAQY--GVTKFSDLTEEEFRTIYLNTLLRKEPGNKMKQAKSVGDLAPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKM--DKACMGGLPSNAYSAIK 346          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.589e-22
Identity = 56/157 (35.67%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  212 RYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGL----SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYI 670
            +Y K Y   EE  LR A + +N+ +I+  N++      ++ + +NKF D + EEF++         + T        +  LP+ KDWRE G V+PV++QG CGSCW F+  G++E       G    LS Q L+DC++   N+GC  G   QAFEY+
Sbjct:   35 KYAKSYSPKEEA-LRRAVWEENMRMIKLHNKENSLGKNNFTMKMNKFGDQTSEEFRKSIDNIPIPAAMTDPHAQNHVSIGLPDYKDWREEGYVTPVRNQGKCGSCWAFAAAGAIEGQMFWKTGNLTPLSVQNLLDCSKTVGNKGCQSGTAHQAFEYV 190          
The following BLAST results are available for this feature:
BLAST of CN189273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CATL_SCHMA3.058e-2339.39Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CATS_HUMAN5.216e-2339.88Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
CATV_NPVHZ6.813e-2338.51Viral cathepsin OS=Heliothis zea nuclear polyhedro... [more]
CATJ_RAT6.813e-2336.94Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
PAPA4_CARPA8.898e-2337.04Papaya proteinase 4 OS=Carica papaya PE=1 SV=3[more]
CYSP1_ORYSJ8.898e-2335.38Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
CYSP1_DICDI1.162e-2238.55Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CATS_BOVIN1.162e-2240.49Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
CATF_HUMAN1.162e-2239.02Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
CATJ_MOUSE2.589e-2235.67Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J11_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189273 ID=CN189273; Name=CN189273; organism=Citrus sinensis; type=EST; length=674bp
GAGGTAATCATTAGGCATGGCTCGCCCTGAACATTTGGTCTCGTCCATCA
TCTTGTTGCTTTGCTGCGCTGCCGCAGCATCAGCATCAAGCTTCGACGAC
TCCAATCCGATCAGATTGGTATCATCGGACGGTCTCCGTGACTTCGAGAC
CTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATGCTCTCTCCTTTGCCC
GTTTTGCTCGCAGGTATGGAAAGATTTACGAGTCCGTTGAGGAGATGAAG
CTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTTAATCAGATCTACGAA
TCGTAAAGGCCTATCTTACAGGCTCGGGTTGAACAAGTTTGCTGATTGGA
GCTGGGAAGAGTTCCAAAGGCACAGGTTGGGAGCTGCACAAAACTGCTCT
GCCACTACAAAAGGAAATCACAAGCTTACTGCTGATGTGCTTCCAGAAAC
GAAAGACTGGAGGGAATCTGGCATAGTAAGCCCAGTTAAAGACCAAGGTC
ACTGTGGATCTTGCTGGACTTTCAGCACGACTGGATCTCTTGAGGCTGCT
TACCACCAGGCCTTTGGAAAGGGTATCTCTTTGTCAGAACAGCAGCTTGT
AGACTGTGCCCAAGCTTTCAACAACCAGGGATGCAATGGTGGGTTGCCAT
CCCAAGCCTTTGAATACATCAAAG
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