DR908619

Overview
NameDR908619
Unique NameDR908619
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: U1SBP_BOVIN (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos taurus GN=SNRNP35 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.017e-16
Identity = 43/87 (49.43%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    9 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 269
            TLFVARL+ +T E K+K  F  YG I+R+RLV D  T   +GYAFIEY   R +  AY+ ADG  +D   + VD E  RT+  W PR
Sbjct:   52 TLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKDERSLLKAYRDADGLVIDQHEIFVDYELERTLKGWIPR 138          
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: U1SBP_MOUSE (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus musculus GN=Snrnp35 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.329e-16
Identity = 43/87 (49.43%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    9 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 269
            TLFVARL+ +T E K+K  F  YG I+R+RLV D  T   +GYAFIEY   R +  AY+ ADG  +D   + VD E  RT+  W PR
Sbjct:   52 TLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALMKAYRDADGLVIDQHEIFVDYELERTLRGWIPR 138          
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: U1SBP_RAT (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Rattus norvegicus GN=Snrnp35 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.267e-16
Identity = 43/87 (49.43%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    9 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 269
            TLFVARL+ +T E K+K  F  YG I+R+RLV D  T   +GYAFIEY   R +  AY+ ADG  +D   + VD E  RT+  W PR
Sbjct:   52 TLFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALLKAYRDADGLVIDQHEIFVDYELERTLRGWIPR 138          
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: U1SBP_HUMAN (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo sapiens GN=SNRNP35 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.267e-16
Identity = 43/87 (49.43%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    9 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 269
            TLFVARL+ +T E K+K  F  YG I+R+RLV D  T   +GYAFIEY   R +  AY+ ADG  +D   + VD E  RT+  W PR
Sbjct:   52 TLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHEIFVDYELERTLKGWIPR 138          
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: U1SBP_XENLA (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Xenopus laevis GN=snrnp35 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.292e-15
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 3
Query:    9 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 269
            TLFV+RLS +TTE K+K  F  YG IKR+RLV D  T   +GYAFIEY     +  A++ A+   +D R V VD E  R +  W PR
Sbjct:   52 TLFVSRLSPQTTEEKLKEVFSRYGDIKRIRLVRDFITGFSKGYAFIEYKQENAIMKAHRDANKLVIDQREVFVDFELERNLKGWIPR 138          
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: RU17_YEAST (U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Saccharomyces cerevisiae GN=SNP1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.064e-13
Identity = 36/92 (39.13%), Postives = 59/92 (64.13%), Query Frame = 3
Query:    3 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD---GRKLDGRRVLVDVERGRTVPNWRPR 269
            Y+T+F+ RL Y+  E ++++ F  +G I+++R+V DK T K +GYAFI +      K A+K+     G ++  R  +VD+ERGRTV  ++PR
Sbjct:  106 YRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEIGVHRGIQIKDRICIVDIERGRTVKYFKPR 197          
The following BLAST results are available for this feature:
BLAST of DR908619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
U1SBP_BOVIN1.017e-1649.43U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
U1SBP_MOUSE1.329e-1649.43U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
U1SBP_RAT2.267e-1649.43U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
U1SBP_HUMAN2.267e-1649.43U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
U1SBP_XENLA7.292e-1548.28U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
RU17_YEAST3.064e-1339.13U1 small nuclear ribonucleoprotein 70 kDa homolog ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16747 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-16_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908619 ID=DR908619; Name=DR908619; organism=Citrus sinensis; type=EST; length=605bp
CATACAAGACACTGTTTGTTGCTAGGCTGAGTTATGAGACAACTGAGAGT
AAAATCAAAAGGGAGTTTGAGTCTTATGGGCCAATTAAACGGGTTCGGTT
GGTTACTGATAAAGAGACAAATAAACCCAGAGGTTATGCTTTCATTGAGT
ACATGCACACTCGGGATATGAAAGCTGCATATAAACAAGCTGATGGGAGG
AAGCTTGATGGCAGAAGGGTGCTTGTTGATGTTGAGCGTGGTCGAACAGT
CCCTAATTGGCGTCCTCGCAGGCTAGGCGGTGGACTTGGAACAACCAGGG
TTGGAGGGGAAGAAGTTAACCAGAGATATTCTGGAAGGGAGCAAGAGCCT
TCAAGAGGACCATCTCGGTCTGCAGAGCCTAGGATACGAGAGGATCGACA
TGGTGACCGGGAAAGATCCCGTGAAAGGGGGAGGGATAGAGAGAGGGAAC
GGGAGAAGTCCCTTGAGCTCTCCCATGACAGACCAAGAGATCGTGATCAT
AGAGATGATAGACACCATAGAGATCGTGACAGAACTAGAGACAGAGAGAG
GGAGAGAGACCGAGGGCGTGAACGTGACCGTGACCGAACACGTGATCGTG
ATCGC
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