DR908617

Overview
NameDR908617
Unique NameDR908617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CSRP1_RAT (Cysteine and glycine-rich protein 1 OS=Rattus norvegicus GN=Csrp1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.173e-14
Identity = 45/164 (27.44%), Postives = 75/164 (45.73%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL------------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 458
            VY  +++  +   +HK+CF C  CK  L  +        +YC+  + + +   G       GT  + K E L              N NA K + K +G  ++C  C + VY  EKV   G ++H+SCF+C+  G  +  +     +G++YCK  + + F  KG
Sbjct:   17 VYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSMDKGESLGIKHEEAPGHRPTTNPNASKFAQK-IGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 179          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: LIMA1_HUMAN (LIM domain and actin-binding protein 1 OS=Homo sapiens GN=LIMA1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 43/130 (33.08%), Postives = 64/130 (49.23%), Query Frame = 3
Query:  192 PKIVKPEKLVEN---ENAQKVSNKFVG-TRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ----------LESDLEKSQISEKPTPVQIAAES 539
            PK + P+    +    +  K   KF    R+ CV C +TVYP E++  N   +H SCF+CS+    +S   Y +  G++YCK H  QLF+ KGNY +            S  E  +I E+P  +  A E+
Sbjct:  358 PKPLSPDSRASSLSESSPPKAMKKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHRPHKDLWASKNENEEILERPAQLANARET 487          

HSP 2 Score: 68.5514 bits (166), Expect = 2.867e-11
Identity = 27/64 (42.19%), Postives = 42/64 (65.62%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTP 194
            VY +++L A+ +V+H +CFRC +C   L L  + S  G +YC+PHF+QLFK  G+ ++ F   P
Sbjct:  397 VYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHRP 460          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CSRP1_MOUSE (Cysteine and glycine-rich protein 1 OS=Mus musculus GN=Csrp1 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 45/164 (27.44%), Postives = 74/164 (45.12%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL------------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 458
            VY  +++  +   +HK+CF C  CK  L  +        +YC+  + + +   G       GT    K E L              N NA K + K +G  ++C  C + VY  EKV   G ++H+SCF+C+  G  +  +     +G++YCK  + + F  KG
Sbjct:   17 VYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQK-IGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 179          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CSRP1_COTJA (Cysteine and glycine-rich protein 1 OS=Coturnix coturnix japonica GN=CSRP1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 46/163 (28.22%), Postives = 75/163 (46.01%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL-----------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 458
            VY  +++  +   +HK+CF C  CK  L  +        +YC+  + + +   G       GT    K E L             N NA +++ K VG  D C  C + VY  EKV   G ++H+SCF+C+  G ++  +     +G++YCK  + + F  KG
Sbjct:   17 VYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGYGYGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQK-VGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKG 178          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CSRP1_CHICK (Cysteine and glycine-rich protein 1 OS=Gallus gallus GN=CSRP1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 46/163 (28.22%), Postives = 75/163 (46.01%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL-----------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 458
            VY  +++  +   +HK+CF C  CK  L  +        +YC+  + + +   G       GT    K E L             N NA +++ K VG  D C  C + VY  EKV   G ++H+SCF+C+  G ++  +     +G++YCK  + + F  KG
Sbjct:   17 VYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGYGYGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQK-VGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKG 178          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CSRP3_BOVIN (Cysteine and glycine-rich protein 3 OS=Bos taurus GN=CSRP3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.375e-13
Identity = 48/180 (26.67%), Postives = 83/180 (46.11%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG----------------SLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG-NYSQLESDLEK 491
            VY  +++  + R +HK CF C  C+  L  +   + E  +YC+  + + +   G                 L   F+ +PK  +      + N  K + KF G  +KC  C ++VY  EKV   G  +H++CF+C+  G ++  +N    +G+LYCK  + + F   G  +  L   +EK
Sbjct:   17 VYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPK--QARSATTSSNPSKFA-KF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNFGPTGIGFGGLTHQVEK 192          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: XIRP2_MOUSE (Xin actin-binding repeat-containing protein 2 OS=Mus musculus GN=Xirp2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.346e-13
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSF 182
            VY ++ L AD + +HK+CFRCHHC   L L N+ S  G +YC+PHF QLFK  G+ ++ F
Sbjct: 3264 VYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLFKSKGNYDEGF 3323          

HSP 2 Score: 74.7146 bits (182), Expect = 4.001e-13
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  222 ENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 470
            E   A +  + F+  ++ C+ C +TVYP E +  +   +H+SCF+C H    +S  NY +  G++YCK H  QLF+ KGNY +
Sbjct: 3239 EMSRAFQEESAFLSDKEICIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLFKSKGNYDE 3321          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CSRP1_PONAB (Cysteine and glycine-rich protein 1 OS=Pongo abelii GN=CSRP1 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.346e-13
Identity = 44/164 (26.83%), Postives = 74/164 (45.12%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL------------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 458
            VY  +++  +   +HK+CF C  CK  L  +        +YC+  + + +   G       GT    K E L              N NA K + K +G  ++C  C + VY  EKV   G ++H++CF+C+  G  +  +     +G++YCK  + + F  KG
Sbjct:   17 VYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEESPGHRPTTNPNASKFAQK-IGGSERCPRCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 179          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CSRP1_HUMAN (Cysteine and glycine-rich protein 1 OS=Homo sapiens GN=CSRP1 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.346e-13
Identity = 44/164 (26.83%), Postives = 74/164 (45.12%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL------------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 458
            VY  +++  +   +HK+CF C  CK  L  +        +YC+  + + +   G       GT    K E L              N NA K + K +G  ++C  C + VY  EKV   G ++H++CF+C+  G  +  +     +G++YCK  + + F  KG
Sbjct:   17 VYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQK-IGGSERCPRCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 179          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CSRP1_BOVIN (Cysteine and glycine-rich protein 1 OS=Bos taurus GN=CSRP1 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.346e-13
Identity = 45/164 (27.44%), Postives = 74/164 (45.12%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL------------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 458
            VY  +++  +   +HK+CF C  CK  L  +        +YC+  + + +   G       GT  + K E L              N N  K + K VG  ++C  C + VY  EKV   G ++H+SCF+C+  G  +  +     +G++YCK  + + F  KG
Sbjct:   17 VYFAEEVQCEGSSFHKSCFLCLVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSMDKGESLGIRHEEAPGHRPTTNPNTSKFAQK-VGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 179          
The following BLAST results are available for this feature:
BLAST of DR908617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
CSRP1_RAT6.173e-1427.44Cysteine and glycine-rich protein 1 OS=Rattus norv... [more]
LIMA1_HUMAN1.053e-1333.08LIM domain and actin-binding protein 1 OS=Homo sap... [more]
CSRP1_MOUSE1.053e-1327.44Cysteine and glycine-rich protein 1 OS=Mus musculu... [more]
CSRP1_COTJA1.053e-1328.22Cysteine and glycine-rich protein 1 OS=Coturnix co... [more]
CSRP1_CHICK1.053e-1328.22Cysteine and glycine-rich protein 1 OS=Gallus gall... [more]
CSRP3_BOVIN1.375e-1326.67Cysteine and glycine-rich protein 3 OS=Bos taurus ... [more]
XIRP2_MOUSE2.346e-1350.00Xin actin-binding repeat-containing protein 2 OS=M... [more]
CSRP1_PONAB2.346e-1326.83Cysteine and glycine-rich protein 1 OS=Pongo abeli... [more]
CSRP1_HUMAN2.346e-1326.83Cysteine and glycine-rich protein 1 OS=Homo sapien... [more]
CSRP1_BOVIN2.346e-1327.44Cysteine and glycine-rich protein 1 OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16745 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-13_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908617 ID=DR908617; Name=DR908617; organism=Citrus sinensis; type=EST; length=605bp
CTGTGTACCTTGTTGACAAGTTGACGGCCGATAATCGGGTCTATCACAAA
GCTTGCTTCCGGTGCCACCATTGCAAAGGAACCCTCAAGCTCAGTAACTT
CAATTCCTTTGAGGGGGTCCTGTATTGCAGGCCTCACTTTGATCAGCTCT
TCAAGAGAACTGGCAGCCTGGAGAAGAGTTTTGAAGGAACACCAAAGATT
GTGAAACCTGAAAAGCTCGTTGAAAATGAGAATGCACAGAAAGTCTCCAA
CAAGTTTGTGGGCACCAGAGATAAATGTGTGGGATGCGATAGGACTGTTT
ATCCAACTGAGAAGGTTTCTGTAAATGGCGCCGCATATCATAGGAGCTGC
TTCAAGTGCAGCCATGGAGGTTGCACCATCAGCCCATCAAATTATATTGC
CCATGAGGGGAAACTCTACTGCAAGCATCATCACATACAACTCTTCAGGG
AGAAAGGAAACTACAGCCAGCTTGAGAGTGATCTTGAGAAGAGTCAAATC
TCTGAGAAGCCAACTCCTGTCCAAATTGCTGCCGAATCATAACTTCCAAG
TGGATTTTCTTATTTGTAGTATTTTTGTGCGTAAATCGTATTAATTTCTT
AACTT
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