DR908617

Overview
NameDR908617
Unique NameDR908617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: LIMA1_MOUSE (LIM domain and actin-binding protein 1 OS=Mus musculus GN=Lima1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.064e-13
Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 3
Query:  192 PKIVKPEKLVEN---ENAQKVSNKFVG-TRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 470
            PK + P+    +    +  K + KF    ++ CV C +TVYP E++  N   +H SCF+CS+    +S   Y +  G++YCK H  QLF+ KGNY +
Sbjct:  356 PKPLSPDARTSSLPESSPSKTAKKFQAPAKESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 452          

HSP 2 Score: 67.781 bits (164), Expect = 4.891e-11
Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSF 182
            VY +++L A+ +V+H +CFRC +C   L L  + S  G +YC+PHF+QLFK  G+ ++ F
Sbjct:  395 VYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGF 454          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CRIP2_BOVIN (Cysteine-rich protein 2 OS=Bos taurus GN=CRIP2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.226e-13
Identity = 51/176 (28.98%), Postives = 77/176 (43.75%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC-RPHFDQLFKRTGS---------LEKSFEGTPKIVKP-EKLVENENAQKVSNK------------FVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYC-KHHHIQLFREKG 458
            VY  +K+++  + +H+ C RC HC  TL        +G  +C +P +  LF   G           EK     P++  P E  V     +K S              F G  + C  C++ VY  EKV+  G  +HR C +C   G T++P  +  H+G+ YC K  +  LF  KG
Sbjct:   12 VYFAEKVSSLGKDWHRFCLRCEHCSKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPSAEKPQVTGPIEVPVARTEERKASGPPKGPSKASSVTTFTGEPNMCPRCNKRVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: LIMC_DICDI (LIM domain-containing protein C OS=Dictyostelium discoideum GN=limC PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.546e-12
Identity = 42/163 (25.77%), Postives = 68/163 (41.72%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRT-----GSLEKSFEGTPKIVKPEKLVEN------ENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 458
            VY  + + A  + YHK C +C HC   L+L  ++  +G  YC+  +D+LF++      G +  SFE  PK+     +            ++V  +   T   C  C +  Y  E    N   +H++CF C      +    Y   EG +YC   +   F   G
Sbjct:   12 VYAAEAVKACEKQYHKLCLQCFHCHKILQLGQYSERDGQPYCKTDYDRLFRQAGYRGGGVVADSFEPAPKVETTTPVEPTPPPTFLTPTEEVKVQLFPT--NCPKCGKKAYFNELKVYNSRDWHKTCFACFSCNKNLVSGQYSEKEGLIYCPRCYQSKFGPSG 172          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: LIMD2_RAT (LIM domain-containing protein 2 OS=Rattus norvegicus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 3
Query:  267 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 470
            ++ C  C +TVYP E++  +   +H SCF C H    +S  +Y A  G+ YCK H  QLF+ KGNY +
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCKPHFQQLFKSKGNYDE 105          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: LIMD2_HUMAN (LIM domain-containing protein 2 OS=Homo sapiens GN=LIMD2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.287e-11
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 3
Query:  267 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 470
            ++ C  C +TVYP E++  +   +H SCF C H    +S  +Y A  G+ YCK H  QLF+ KGNY +
Sbjct:   37 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDE 104          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CRIP2_HUMAN (Cysteine-rich protein 2 OS=Homo sapiens GN=CRIP2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.287e-11
Identity = 49/176 (27.84%), Postives = 74/176 (42.05%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC-RPHFDQLFKRTGS---------LEKSFEGTPKIVKP-EKLVENENAQKVSNK------------FVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYC-KHHHIQLFREKG 458
            VY  +K+++  + +HK C +C  C  TL        +G  +C +P +  LF   G           EK     P++  P E        +K S              F G  + C  C + VY  EKV+  G  +HR C +C   G T++P  +  H+G+ YC K  +  LF  KG
Sbjct:   12 VYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRASSVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: LIMD2_BOVIN (LIM domain-containing protein 2 OS=Bos taurus GN=LIMD2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.681e-11
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 3
Query:  267 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 470
            ++ C  C +TVYP E++  +   +H SCF C H    +S  +Y A  G+ YCK H  QLF+ KGNY +
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHSSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDE 105          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: LIMD2_MOUSE (LIM domain-containing protein 2 OS=Mus musculus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.195e-11
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 3
Query:  267 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 470
            ++ C  C +TVYP E++  +   +H SCF C H    +S  +Y A  G+ YC+ H  QLF+ KGNY +
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDE 105          

HSP 2 Score: 67.3958 bits (163), Expect = 6.388e-11
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSF 182
            VY +++L AD  ++H +CF C HC   L L ++ +  G  YCRPHF QLFK  G+ ++ F
Sbjct:   48 VYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDEGF 107          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CRIP2_MOUSE (Cysteine-rich protein 2 OS=Mus musculus GN=Crip2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.867e-11
Identity = 49/176 (27.84%), Postives = 75/176 (42.61%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC-RPHFDQLFKRTGS---------LEKSFEGTPKIVKP-EKLVENENAQKVSNK------------FVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYC-KHHHIQLFREKG 458
            VY  +K+++  + +HK C +C  C  TL        +G  +C +P +  LF   G           EK     P++  P E  V     +K S              F G  + C  C++ VY  EKV+  G  +HR C +C     T++P  +  H+G+ YC K  +  LF  KG
Sbjct:   12 VYFAEKVSSLGKDWHKFCLKCERCNKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPQTEAPQVTGPIEVPVVRTEERKTSGPPKGPSKASSVTTFTGEPNMCPRCNKRVYFAEKVTSLGKDWHRPCLRCERCSKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CRIP2_RAT (Cysteine-rich protein 2 OS=Rattus norvegicus GN=Crip2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.745e-11
Identity = 49/176 (27.84%), Postives = 75/176 (42.61%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC-RPHFDQLFKRTGS---------LEKSFEGTPKIVKP-EKLVENENAQKVSNK------------FVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYC-KHHHIQLFREKG 458
            VY  +K+++  + +HK C +C  C  TL        +G  +C +P +  LF   G           EK     P++  P E  V     +K S              F G  + C  C++ VY  EKV+  G  +HR C +C     T++P  +  H+G+ YC K  +  LF  KG
Sbjct:   12 VYFAEKVSSLGKDWHKFCLKCERCNKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPPTEAPQVTGPIEVPVVRTEERKTSGPPKGPSKASSVTTFTGEPNMCPRCNKRVYFAEKVTSLGKDWHRPCLRCERCSKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187          
The following BLAST results are available for this feature:
BLAST of DR908617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
LIMA1_MOUSE3.064e-1336.08LIM domain and actin-binding protein 1 OS=Mus musc... [more]
CRIP2_BOVIN5.226e-1328.98Cysteine-rich protein 2 OS=Bos taurus GN=CRIP2 PE=... [more]
LIMC_DICDI7.546e-1225.77LIM domain-containing protein C OS=Dictyostelium d... [more]
LIMD2_RAT9.855e-1241.18LIM domain-containing protein 2 OS=Rattus norvegic... [more]
LIMD2_HUMAN1.287e-1141.18LIM domain-containing protein 2 OS=Homo sapiens GN... [more]
CRIP2_HUMAN1.287e-1127.84Cysteine-rich protein 2 OS=Homo sapiens GN=CRIP2 P... [more]
LIMD2_BOVIN1.681e-1141.18LIM domain-containing protein 2 OS=Bos taurus GN=L... [more]
LIMD2_MOUSE2.195e-1139.71LIM domain-containing protein 2 OS=Mus musculus GN... [more]
CRIP2_MOUSE2.867e-1127.84Cysteine-rich protein 2 OS=Mus musculus GN=Crip2 P... [more]
CRIP2_RAT3.745e-1127.84Cysteine-rich protein 2 OS=Rattus norvegicus GN=Cr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16745 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-13_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908617 ID=DR908617; Name=DR908617; organism=Citrus sinensis; type=EST; length=605bp
CTGTGTACCTTGTTGACAAGTTGACGGCCGATAATCGGGTCTATCACAAA
GCTTGCTTCCGGTGCCACCATTGCAAAGGAACCCTCAAGCTCAGTAACTT
CAATTCCTTTGAGGGGGTCCTGTATTGCAGGCCTCACTTTGATCAGCTCT
TCAAGAGAACTGGCAGCCTGGAGAAGAGTTTTGAAGGAACACCAAAGATT
GTGAAACCTGAAAAGCTCGTTGAAAATGAGAATGCACAGAAAGTCTCCAA
CAAGTTTGTGGGCACCAGAGATAAATGTGTGGGATGCGATAGGACTGTTT
ATCCAACTGAGAAGGTTTCTGTAAATGGCGCCGCATATCATAGGAGCTGC
TTCAAGTGCAGCCATGGAGGTTGCACCATCAGCCCATCAAATTATATTGC
CCATGAGGGGAAACTCTACTGCAAGCATCATCACATACAACTCTTCAGGG
AGAAAGGAAACTACAGCCAGCTTGAGAGTGATCTTGAGAAGAGTCAAATC
TCTGAGAAGCCAACTCCTGTCCAAATTGCTGCCGAATCATAACTTCCAAG
TGGATTTTCTTATTTGTAGTATTTTTGTGCGTAAATCGTATTAATTTCTT
AACTT
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