EY756760

Overview
NameEY756760
Unique NameEY756760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_SYNJB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. GN=dxr PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.918e-15
Identity = 39/74 (52.70%), Postives = 54/74 (72.97%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYAAGL 233
            AYAAGR GGT+  VL+AANE AV +F+ E+I +LDI +++E  C++H+  ++  PSLEDI+  DAWAR   A L
Sbjct:  311 AYAAGRRGGTLPAVLNAANEAAVALFLQERIRFLDIPRLLERVCERHQ--VIADPSLEDILQADAWARRETAQL 382          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_SYNJA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dxr PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.918e-15
Identity = 37/69 (53.62%), Postives = 55/69 (79.71%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWARE 218
            AYAAG+AGGT+  VL+AANE AV +F+ E+I +LDI +++E  C++H+  ++ +PSLEDI+  DAWAR+
Sbjct:  311 AYAAGQAGGTLPAVLNAANEAAVALFLQERIRFLDIPRLLEQVCERHQ--VIPAPSLEDILEVDAWARQ 377          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_CYAP8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain PCC 8801) GN=dxr PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 35/69 (50.72%), Postives = 53/69 (76.81%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWARE 218
            AYAAGR+GG +  VL+AANE+AV +F++EKI +L+I K++E+ CD+      ++P+LEDI+  D WAR+
Sbjct:  311 AYAAGRSGGAIPAVLNAANEQAVALFLEEKIAFLEIPKLIEMACDRFTNQNTSTPTLEDILEADRWARQ 379          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_CYAP7 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain PCC 7424) GN=dxr PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAR 215
            AYAAGRAGG M  VL+AANE+AV +F++E+IG+LDI +++E  CD+        P+L+DII  D WAR
Sbjct:  311 AYAAGRAGGAMPAVLNAANEQAVALFLEERIGFLDIPRLIETVCDRFTTHNQAHPTLDDIISADQWAR 378          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_CYAP4 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dxr PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.977e-15
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWARE 218
            AYA GRAGG M  VL+AANE+AV +F+ E+I +LDI +++E TCD+  +     PSLEDI+  D WAR+
Sbjct:  311 AYAVGRAGGAMPAVLNAANEQAVALFLAERIAFLDIPRLIEQTCDRFSSKNCAEPSLEDILAADQWARQ 379          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_SYNY3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechocystis sp. (strain PCC 6803) GN=dxr PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.470e-14
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAR 215
            AY AGRAGG M  VL+AANE+AV +F+ EKI +LDI +++E TCD +      SP LE I+  D WAR
Sbjct:  313 AYGAGRAGGAMPAVLNAANEQAVALFLQEKISFLDIPRLIEKTCDLYVGQNTASPDLETILAADQWAR 380          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_BREBN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dxr PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.091e-13
Identity = 40/71 (56.34%), Postives = 45/71 (63.38%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYA 224
            AY  G AGGT T VL+AANE AV+MF+   I +LDI KVV  TC+ H    V SP L DI   D WAR YA
Sbjct:  310 AYECGMAGGTHTAVLNAANEVAVDMFLKGAIRFLDIEKVVRKTCEAHSG--VASPELADIFAADEWARSYA 378          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_PROM9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9312) GN=dxr PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAR 215
            AYAAG++ GTM  VL+AANE AVE F+ EKI + +I   +   C+ H  +L  SP LEDI+  D WAR
Sbjct:  325 AYAAGKSSGTMPAVLNAANEMAVEQFLKEKISFQEIPTFISKACESHMENLNLSPELEDILEVDNWAR 392          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_PROM5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9515) GN=dxr PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.151e-12
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAR 215
            AY+AG+  GTM  VL+AANE AV+ F+ EKI + +I   +  TC+ H   L  +P+LEDI+  D WAR
Sbjct:  325 AYSAGKCSGTMPAVLNAANEMAVDQFLKEKISFQEIPTFINKTCEAHINKLNLNPNLEDILEVDNWAR 392          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_GLOVI (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Gloeobacter violaceus GN=dxr PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.151e-12
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 3
Query:    6 RPAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYAAGL 233
            R AY AGRAGGT   VL+AANE+AV  F+ EK+ +L++ +++E T + HK+     P L+D+   D WARE+   L
Sbjct:  309 RLAYQAGRAGGTYPTVLNAANEEAVAQFLQEKVRFLEMSRLLEATLEAHKS--AGEPDLDDVCGADRWAREHVRWL 382          
The following BLAST results are available for this feature:
BLAST of EY756760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DXR_SYNJB2.918e-1552.701-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNJA2.918e-1553.621-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAP83.811e-1550.721-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAP73.811e-1554.411-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAP44.977e-1553.621-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNY32.470e-1454.411-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BREBN2.091e-1356.341-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM93.567e-1351.471-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM55.151e-1248.531-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GLOVI5.151e-1246.051-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-013-D03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756760 ID=EY756760; Name=EY756760; organism=Citrus sinensis; type=EST; length=419bp
CCACGCGTCCGGCCTATGCTGCTGGACGGGCTGGAGGCACCATGACAGGA
GTTCTTAGTGCAGCTAACGAGAAAGCAGTAGAGATGTTCATTGATGAAAA
GATTGGCTATCTGGATATTTTCAAGGTTGTGGAGCTAACGTGTGATAAGC
ACAAGGCGGACTTGGTAACCTCGCCTTCCCTAGAGGATATAATACATTAT
GATGCATGGGCACGAGAGTATGCAGCTGGTTTGCAATTTTCATCTGGTAG
AAGCCCTGTTCCAGCATGACTGCTTGCATTGATGCCCTACTTTGAGAACT
AGAGAGATGTGTTTACTTTTTGCCAAAAACTGGTATTCTCGTCAATGTTT
AAAGAGGCATCGAGCAATTGTACCATAAATAAATATAAGGTGGGGATTCA
GTATGTGTCCCCGATTTTN
back to top