EY756676 | Citrus Genome Database

Overview


Name	EY756676
Unique Name	EY756676
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	400

Libraries


Library Name	Type
Sweet orange leaf, field plant B	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33_XENTR (Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1 PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.774e-26
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQS+A+ ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33_XENLA (Histone H3.3 OS=Xenopus laevis PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.774e-26
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQS+A+ ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33_SPISO (Histone H3.3 OS=Spisula solidissima PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.774e-26
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQS+A+ ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33_RAT (Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.774e-26
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQS+A+ ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33_RABIT (Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.774e-26
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQS+A+ ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33_PONAB (Histone H3.3 OS=Pongo abelii PE=2 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.774e-26
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQS+A+ ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33_PIG (Histone H3.3 OS=Sus scrofa GN=H3F3A PE=2 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.774e-26
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQS+A+ ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33_MOUSE (Histone H3.3 OS=Mus musculus GN=H3f3a PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.774e-26
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQS+A+ ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33_HUMAN (Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.774e-26
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQS+A+ ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33_DROME (Histone H3.3 OS=Drosophila melanogaster GN=His3.3A PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.774e-26
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQS+A+ ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of EY756676 vs. ExPASy Swiss-Prot

BLAST of EY756676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184


Match Name	E-value	Identity	Description
H33_XENTR	4.774e-26	90.48	Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1...	[more]
H33_XENLA	4.774e-26	90.48	Histone H3.3 OS=Xenopus laevis PE=1 SV=3	[more]
H33_SPISO	4.774e-26	90.48	Histone H3.3 OS=Spisula solidissima PE=1 SV=2	[more]
H33_RAT	4.774e-26	90.48	Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV...	[more]
H33_RABIT	4.774e-26	90.48	Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=...	[more]
H33_PONAB	4.774e-26	90.48	Histone H3.3 OS=Pongo abelii PE=2 SV=3	[more]
H33_PIG	4.774e-26	90.48	Histone H3.3 OS=Sus scrofa GN=H3F3A PE=2 SV=3	[more]
H33_MOUSE	4.774e-26	90.48	Histone H3.3 OS=Mus musculus GN=H3f3a PE=1 SV=2	[more]
H33_HUMAN	4.774e-26	90.48	Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2	[more]
H33_DROME	4.774e-26	90.48	Histone H3.3 OS=Drosophila melanogaster GN=His3.3A...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS13-C1-001-011-D07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY756676 ID=EY756676; Name=EY756676; organism=Citrus sinensis; type=EST; length=400bp
TTCGGAAGACCCACGCGTCCGGAGAAATCTCTCAAGATTTTAAGACCGAT
CTGAGGTTCCAGAGCAGCGCCGTTGCGGCTCTTCAAGAACCTGCTGAGGC
TTATCTTGTGGGTCTCTTTGAAGATACCAATCTCTGCGCCATTCATGCTA
AGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCAGA
GGAGAGAGAGCTTAGTCGATTAATTGATTTGTATCTAGATCTGATTTGGC
TTTTAGCGTTTCAGTTTCTAAGAAATGGGTATGCAAGATTGTTTTGGAAT
GTAATGGAAAGTTTGAATCTATTGTTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG