CX286793

Overview
NameCX286793
Unique NameCX286793
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length492
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_COCIM (Leukotriene A-4 hydrolase OS=Coccidioides immitis GN=CIMG_05732 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 6.208e-12
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 1
Query:  313 VTLSDHSSVLIVFSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTP 483
            + L +   V I  +T+   +ALQWL+P QT N  HP++++QCQAIHAR++FPCQDTP
Sbjct:   99 IPLDELIEVDISVNTTEKCTALQWLNPEQTSNGKHPYMFSQCQAIHARAIFPCQDTP 155          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_DICDI (Leukotriene A-4 hydrolase OS=Dictyostelium discoideum GN=lkhA PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.383e-11
Identity = 45/151 (29.80%), Postives = 71/151 (47.02%), Query Frame = 1
Query:   61 IDPHSFTESTHPLTTHISLSLYFDFSSSTIHAAAILTLAFPHAGP--LSLDTRSLTIHQVXXXXXXXXXXXXXXXXXXXIKGRHLIVTLSD-------HSSVLIVFSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTPA 486
            +DP S +       T ++L L  +F  S +     +       G   L LDT  L I                      + G+ LI+++ +          V + ++T+   +ALQWL+  QT  KLHP++++QCQAIHARS+ PCQD+P+
Sbjct:    1 MDPSSLSNPQECKVTSLNLVLSVNFEKSQLQGYVEVASQIVKEGTESLILDTNQLEISHCNDVTSNPINFKLSEEHK--VFGKALIISIPEGLRSVGKEFIVRVYYNTTVDSNALQWLTKDQTAGKLHPYLFSQCQAIHARSLVPCQDSPS 149          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_MAGGR (Leukotriene A-4 hydrolase OS=Magnaporthe grisea GN=MGG_09481 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 43/150 (28.67%), Postives = 68/150 (45.33%), Query Frame = 1
Query:   52 MAPIDPHSFTESTHPLTTHISLSLYFDFSSSTIHAAAILTL---AFPHAGPLSLDTRSLTIHQVXXXXXXXXXXXXXXXXXXXIKGRHLIVTLSDHSSVL---IVFSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTP 483
            MA  DP + +      T H + +L  DF    +  + +L L       +  + LD+  +++  +                         +   +D   V+   +   T+P  +ALQWL+P QT NK  PF+++Q QA HARS+FPCQDTP
Sbjct:    1 MAARDPSTASNYDAWKTKHTTANLRIDFDDKCLRGSVVLELESRTAKESKEIVLDSSYVSVESIKLNDVQTKWEIKERNGPMGSPLHISVPEGADSGEVVRLEMAVKTTPQCTALQWLTPAQTSNKKAPFMFSQAQACHARSLFPCQDTP 150          
The following BLAST results are available for this feature:
BLAST of CX286793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
LKHA4_COCIM6.208e-1252.63Leukotriene A-4 hydrolase OS=Coccidioides immitis ... [more]
LKHA4_DICDI1.383e-1129.80Leukotriene A-4 hydrolase OS=Dictyostelium discoid... [more]
LKHA4_MAGGR4.024e-1128.67Leukotriene A-4 hydrolase OS=Magnaporthe grisea GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01001B01Rv Veg1 Citrus clementina cDNA clone C01001B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286793 ID=CX286793; Name=CX286793; organism=Citrus clementina; type=EST; length=492bp
ACACAGTCCTCCCTCACTGACCGGGTTAACTCAATTTCCACCATAACAAC
AATGGCACCGATCGACCCGCACTCGTTCACCGAGTCAACTCACCCGCTGA
CCACACACATCTCCCTCTCTCTCTACTTCGACTTCTCTTCATCCACCATC
CACGCCGCAGCCATCCTCACCCTCGCCTTCCCACACGCCGGCCCTCTCTC
TCTGGACACCCGCTCCCTCACCATCCACCAAGTACTCGACCCCCAAACCC
TAACCCCACTCCCCTTCACTCTCTCCCCAACCGACGACCCAATCAAAGGC
CGCCACCTCATCGTCACGCTCTCCGATCACTCCTCTGTACTCATCGTCTT
CTCCACCTCCCCCTCTTTCTCCGCCCTCCAGTGGCTCTCCCCGCCGCAGA
CCTTCAACAAACTCCACCCCTTCGTCTACACACAGTGCCAGGCGATTCAC
GCGCGGTCGGTGTTCCCGTGCCAAGACACCCCCGCGGCGCGT
back to top