CX286802

Overview
NameCX286802
Unique NameCX286802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_PROMP (Chaperone protein dnaJ OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.459e-13
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            Y++LGV+  A A+ +K AYRKLA +YHPDVNK+P AE+KF  I  AY  L + E+R +YD
Sbjct:    5 YQILGVSRDADANTLKSAYRKLARQYHPDVNKDPGAEDKFKEIGKAYEALADPETRARYD 64          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_METFK (Chaperone protein dnaJ OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.459e-13
Identity = 44/91 (48.35%), Postives = 52/91 (57.14%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKE-PNAEEKFMRIKHAYNTLLNSESRRKYDS-GNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YEVLGV   AT +EIK+AYRKLA+KYHPD N + P AEE F   K AY  L + + R  YD  G+   D S + G           GFGNF
Sbjct:    7 YEVLGVNRDATDEEIKKAYRKLAMKYHPDRNPDNPKAEEHFKEAKEAYEVLSDDQKRAAYDQYGHAGVDPSAAAGAGAG-------GFGNF 90          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_HAMD5 (Chaperone protein dnaJ OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.459e-13
Identity = 40/109 (36.70%), Postives = 55/109 (50.46%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQ 546
            YE+LG+A +A   +IK AY++LA KYHPD NK+ +AE KF  +K AY  L + + R  YD    T+         Q+     F+   NF         DFF   Q+  Q
Sbjct:    7 YEILGIAKNANEQDIKDAYKRLAKKYHPDRNKDKDAETKFKEMKEAYEVLSDQQKRAAYDQHGHTAF-------EQSGMGGGFHNSSNFSNVFNDVFSDFFGGHQQRTQ 108          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_PSYCK (Chaperone protein dnaJ OS=Psychrobacter cryohalolentis (strain K5) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.741e-13
Identity = 45/96 (46.88%), Postives = 52/96 (54.17%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKE-PNAEEKFMRIKHAYNTLLNSESRRKYDS------GNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YE+LGV+ +A   EIKRAYRKLA+KYHPD N E P+AEEKF     AY  L + E R  YD        N      +  G   N QD     FGNF
Sbjct:    7 YEILGVSKTADNKEIKRAYRKLAMKYHPDRNSEDPDAEEKFKEASMAYEVLSSEEKRSAYDRMGHAAFENGMGGGGFGGGGGGNFQDIFGDIFGNF 102          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_PROVI (Chaperone protein dnaJ OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.741e-13
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKE-PNAEEKFMRIKHAYNTLLNSESRRKYD 399
            YE+LGV  SA  DEIK+AYRKLALKYHPD N +  +AE+ F  +  AY  L N + RR+YD
Sbjct:    6 YEILGVGRSADKDEIKKAYRKLALKYHPDKNPDNKDAEDHFKEVNEAYEVLSNDDKRRRYD 66          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_LACLC (Chaperone protein dnaJ OS=Lactococcus lactis subsp. cremoris GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.741e-13
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDS-GNRTSDFSYSTGPSQNAQDEEFYGFG 480
            YE LGV  +A+ DEIK+AYRK++ KYHPD+NKE  AE+K+  ++ AY TL + + R  YD  G    +  +  G    A    F GFG
Sbjct:    7 YERLGVDKNASQDEIKKAYRKMSKKYHPDLNKEEGAEDKYKEVQEAYETLSDEQKRAAYDQYGEAGRNGGFGGGGFGGASG--FSGFG 92          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_BURM1 (Chaperone protein dnaJ OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.741e-13
Identity = 42/90 (46.67%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKE-PNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YEVLGVA +A+ DEIK+AYRKLA+KYHPD N +  +AEE F  +K AY  L +S+ R  YD            G   N       GFG F
Sbjct:    7 YEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDNKDAEEHFKEVKEAYEMLSDSQKRAAYDQYGH-------AGVDPNMGGAGAQGFGGF 89          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_BUCAT (Chaperone protein dnaJ OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.741e-13
Identity = 48/133 (36.09%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYDS------GNRTSDFSYSTGPSQNAQDEEFYG--FGNFL---------------RDVQITIEDFFKDLQEEFQ 546
            Y++LG+  SA   EIK+AY+KLA+KYHPD N+ +  AE KF  IK AY  L+N E R  YD        N  S+ +YST  + +A   + +G  FG+                  +++IT+E+  K +++E Q
Sbjct:    7 YQILGIPKSAEEREIKKAYKKLAMKYHPDRNQGDKTAEGKFKEIKEAYEILINEEKRSAYDQYGHAAFENGQSNSTYSTF-TNSADFSDIFGDVFGDIFGGNRTQRAKKGADLCYNMEITLEEAVKGIKKEIQ 138          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_BUCAI (Chaperone protein dnaJ OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=dnaJ PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 9.741e-13
Identity = 48/133 (36.09%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYDS------GNRTSDFSYSTGPSQNAQDEEFYG--FGNFL---------------RDVQITIEDFFKDLQEEFQ 546
            Y++LG+  SA   EIK+AY+KLA+KYHPD N+ +  AE KF  IK AY  L+N E R  YD        N  S+ +YST  + +A   + +G  FG+                  +++IT+E+  K +++E Q
Sbjct:    7 YQILGIPKSAEEREIKKAYKKLAMKYHPDRNQGDKTAEGKFKEIKEAYEILINEEKRSAYDQYGHAAFENGQSNSTYSTF-TNSADFSDIFGDVFGDIFGGNRTQRAKKGADLCYNMEITLEEAVKGIKKEIQ 138          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_BUCA5 (Chaperone protein dnaJ OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.741e-13
Identity = 48/133 (36.09%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYDS------GNRTSDFSYSTGPSQNAQDEEFYG--FGNFL---------------RDVQITIEDFFKDLQEEFQ 546
            Y++LG+  SA   EIK+AY+KLA+KYHPD N+ +  AE KF  IK AY  L+N E R  YD        N  S+ +YST  + +A   + +G  FG+                  +++IT+E+  K +++E Q
Sbjct:    7 YQILGIPKSAEEREIKKAYKKLAMKYHPDRNQGDKTAEGKFKEIKEAYEILINEEKRSAYDQYGHAAFENGQSNSTYSTF-TNSADFSDIFGDVFGDIFGGNRTQRAKKGADLCYNMEITLEEAVKGIKKEIQ 138          
The following BLAST results are available for this feature:
BLAST of CX286802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
DNAJ_PROMP7.459e-1355.00Chaperone protein dnaJ OS=Prochlorococcus marinus ... [more]
DNAJ_METFK7.459e-1348.35Chaperone protein dnaJ OS=Methylobacillus flagella... [more]
DNAJ_HAMD57.459e-1336.70Chaperone protein dnaJ OS=Hamiltonella defensa sub... [more]
DNAJ_PSYCK9.741e-1346.88Chaperone protein dnaJ OS=Psychrobacter cryohalole... [more]
DNAJ_PROVI9.741e-1357.38Chaperone protein dnaJ OS=Prosthecochloris vibriof... [more]
DNAJ_LACLC9.741e-1344.32Chaperone protein dnaJ OS=Lactococcus lactis subsp... [more]
DNAJ_BURM19.741e-1346.67Chaperone protein dnaJ OS=Burkholderia multivorans... [more]
DNAJ_BUCAT9.741e-1336.09Chaperone protein dnaJ OS=Buchnera aphidicola subs... [more]
DNAJ_BUCAI9.741e-1336.09Chaperone protein dnaJ OS=Buchnera aphidicola subs... [more]
DNAJ_BUCA59.741e-1336.09Chaperone protein dnaJ OS=Buchnera aphidicola subs... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01001B11Rv Veg1 Citrus clementina cDNA clone C01001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286802 ID=CX286802; Name=CX286802; organism=Citrus clementina; type=EST; length=555bp
GACAACACGCTTGTCTATCTCCCTCATCTGTTCGCAAAATCTCCTCTTTT
TCACTTTCAGAAACAAACAAACTTCACAGTAACAATACCCAGTTGCAGAT
TTAGCTATGGTGATGAATTTGGTGTCCTCTTAGTTAGTCCGCAGCCTTTT
AGAAATTTTAAGAAGAAGAGGAGAAGCAATTTTAGTACCCTTTTGAGGGC
AAGTCGCAGAGAGTCCCCTTACGAGGTTTTGGGCGTGGCTCCATCTGCGA
CTGCTGATGAAATCAAAAGGGCTTATCGGAAACTTGCTTTGAAGTATCAC
CCTGACGTTAATAAAGAGCCAAATGCAGAGGAGAAATTTATGAGGATTAA
GCATGCATACAATACATTGCTGAATTCTGAGTCACGGAGGAAATATGACT
CTGGAAATCGCACATCAGATTTTTCCTACTCCACTGGCCCAAGCCAAAAT
GCGCAGGATGAAGAATTTTACGGATTTGGTAATTTTTTGAGGGATGTCCA
AATAACAATAGAGGACTTTTTCAAAGATCTTCAAGAAGAATTCCAGAATT
GGGAA
back to top