CX286802

Overview
NameCX286802
Unique NameCX286802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286802_ssr61 microsatellite CX286802_ssr61:61..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_TRIEI (Chaperone protein dnaJ OS=Trichodesmium erythraeum (strain IMS101) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 45/95 (47.37%), Postives = 57/95 (60.00%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQDEEFY-GFG 480
            YE+LGV+ SA  +E+KRAYR+LA KYHPDVNKEP +EE+F  I  AY  L + E + ++D       SG   S FS     S     E F+ GFG
Sbjct:    6 YEILGVSRSADKEELKRAYRRLARKYHPDVNKEPGSEERFKEINRAYEILSDPEMKARFDRFGEAGVSGGAASGFSTDFSDSFADIFESFFSGFG 100          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_STAS1 (Chaperone protein dnaJ OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 41/89 (46.07%), Postives = 50/89 (56.18%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YEVLGV+ SA+ DEIK+AYRKL+ +YHPD+NKE  A+EKF  I  AY  L +   R  YD            G     QD   +G G F
Sbjct:    7 YEVLGVSKSASKDEIKKAYRKLSKQYHPDINKEEGADEKFKEISEAYEVLSDENKRANYDQFGHDGPQGGFGGQGFGGQDFSGFGGGGF 95          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_LACPL (Chaperone protein dnaJ OS=Lactobacillus plantarum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFG 480
            Y+VLGV   A+ DEIK+AYRKL+ KYHPD+N EP AEEKF  +  AY TL +++ R +YD    T       G +     ++F GFG
Sbjct:    7 YKVLGVEKDASQDEIKKAYRKLSKKYHPDLNHEPGAEEKFKAVNEAYETLGDAQKRAQYDQFGSTGG-QQGFGGAGGFGGQDFGGFG 92          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: YR260_MIMIV (DnaJ-like protein R260 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R260 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            YE+LG+ PSA+ ++IK+AYRKLA+KYHPD NK  P AEE F +I HA + L NSE RR YD
Sbjct:    9 YEILGLTPSASEEDIKKAYRKLAIKYHPDKNKGNPEAEEMFKKINHANSILSNSEKRRVYD 69          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_LACF3 (Chaperone protein dnaJ OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = 1
Query:  211 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 414
            E  Y+VLGV   A+  EIKRAYRKLA KYHPDVN EP AE+KF +I  AY TL + + R +YD    T
Sbjct:    4 EDLYDVLGVKKDASEAEIKRAYRKLAAKYHPDVNHEPGAEKKFKKINEAYETLSDDQKRAQYDQFGTT 71          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_ENTFA (Chaperone protein dnaJ OS=Enterococcus faecalis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDS-GNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YEVLG+A  A+ DEIK+AYRKL+ KYHPD+NKE +AEEKF  +  AY  L + + +  YD  G+  +D +Y  G           GFG F
Sbjct:    8 YEVLGLAKGASDDEIKKAYRKLSKKYHPDINKEADAEEKFKEVSEAYEVLSDPQKKAAYDQYGHAGTDPNYGGGAG---------GFGGF 88          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_ANAVT (Chaperone protein dnaJ OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            YE+LGVA  A  +EIK+AYR+LA KYHPDVNKEP AEE+F  I  AY  L   E+R +YD
Sbjct:    6 YEILGVARDADKEEIKQAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSEPETRARYD 65          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_ANASP (Chaperone protein dnaJ OS=Anabaena sp. (strain PCC 7120) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            YE+LGVA  A  +EIK+AYR+LA KYHPDVNKEP AEE+F  I  AY  L   E+R +YD
Sbjct:    6 YEILGVARDADKEEIKQAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSEPETRARYD 65          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ1_SYNY3 (Chaperone protein dnaJ 1 OS=Synechocystis sp. (strain PCC 6803) GN=dnaJ1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 38/60 (63.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            Y+ LGV   A  DEIKRAYR+LA KYHPDVNKEP AEEKF  I  AY  L   E R++YD
Sbjct:    6 YQTLGVTRDADKDEIKRAYRRLARKYHPDVNKEPGAEEKFKEINRAYEVLSEPEIRQRYD 65          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DJB14_XENLA (DnaJ homolog subfamily B member 14 OS=Xenopus laevis GN=dnajb14 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 46/111 (41.44%), Postives = 63/111 (56.76%), Query Frame = 1
Query:  196 RASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLR--DVQITIEDFF 522
            R  + ++ YEVLGV+P A  +++K+AYRKLALK+HPD N  P A E F +I +AY  L N E R++YD           TG   N Q+    G  ++ R  +  IT ED F
Sbjct:   96 RIKKCKTYYEVLGVSPDAGEEDLKKAYRKLALKFHPDKNHAPGATEAFKKIGNAYAVLSNPEKRKQYD----------LTGSEDNVQNNHRNGGFDYHRGFEADITPEDLF 196          
The following BLAST results are available for this feature:
BLAST of CX286802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
DNAJ_TRIEI6.102e-1547.37Chaperone protein dnaJ OS=Trichodesmium erythraeum... [more]
DNAJ_STAS16.102e-1546.07Chaperone protein dnaJ OS=Staphylococcus saprophyt... [more]
DNAJ_LACPL6.102e-1547.13Chaperone protein dnaJ OS=Lactobacillus plantarum ... [more]
YR260_MIMIV7.969e-1562.30DnaJ-like protein R260 OS=Acanthamoeba polyphaga m... [more]
DNAJ_LACF37.969e-1557.35Chaperone protein dnaJ OS=Lactobacillus fermentum ... [more]
DNAJ_ENTFA7.969e-1546.67Chaperone protein dnaJ OS=Enterococcus faecalis GN... [more]
DNAJ_ANAVT7.969e-1561.67Chaperone protein dnaJ OS=Anabaena variabilis (str... [more]
DNAJ_ANASP7.969e-1561.67Chaperone protein dnaJ OS=Anabaena sp. (strain PCC... [more]
DNAJ1_SYNY37.969e-1563.33Chaperone protein dnaJ 1 OS=Synechocystis sp. (str... [more]
DJB14_XENLA7.969e-1541.44DnaJ homolog subfamily B member 14 OS=Xenopus laev... [more]

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Properties
Property NameValue
Genbank descriptionC01001B11Rv Veg1 Citrus clementina cDNA clone C01001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286802 ID=CX286802; Name=CX286802; organism=Citrus clementina; type=EST; length=555bp
GACAACACGCTTGTCTATCTCCCTCATCTGTTCGCAAAATCTCCTCTTTT
TCACTTTCAGAAACAAACAAACTTCACAGTAACAATACCCAGTTGCAGAT
TTAGCTATGGTGATGAATTTGGTGTCCTCTTAGTTAGTCCGCAGCCTTTT
AGAAATTTTAAGAAGAAGAGGAGAAGCAATTTTAGTACCCTTTTGAGGGC
AAGTCGCAGAGAGTCCCCTTACGAGGTTTTGGGCGTGGCTCCATCTGCGA
CTGCTGATGAAATCAAAAGGGCTTATCGGAAACTTGCTTTGAAGTATCAC
CCTGACGTTAATAAAGAGCCAAATGCAGAGGAGAAATTTATGAGGATTAA
GCATGCATACAATACATTGCTGAATTCTGAGTCACGGAGGAAATATGACT
CTGGAAATCGCACATCAGATTTTTCCTACTCCACTGGCCCAAGCCAAAAT
GCGCAGGATGAAGAATTTTACGGATTTGGTAATTTTTTGAGGGATGTCCA
AATAACAATAGAGGACTTTTTCAAAGATCTTCAAGAAGAATTCCAGAATT
GGGAA
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