CX286802

Overview
NameCX286802
Unique NameCX286802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286802_ssr61 microsatellite CX286802_ssr61:61..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_METTE (Chaperone protein dnaJ OS=Methanosarcina thermophila GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDS-GNRTSDFSYSTGPSQNAQDEEFYGFGN 483
            YE+LG++  AT ++IK++YRKLALKYHPD NKEP AEEKF  I  AY  L + E R +YD  G+   +  Y+        D  F GFG+
Sbjct:    8 YEILGLSRDATPEDIKKSYRKLALKYHPDRNKEPGAEEKFKEISEAYAVLSDPEKRAQYDRFGHAGINGQYTAEDIFRGAD--FSGFGD 94          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_LISMF (Chaperone protein dnaJ OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDS-GNRTSDFSYSTGPSQNAQDEEFYGF 477
            YEVLGV+ SA+ADEIK+AYRKL+ +YHPD+NKE  A+EKF  I  AY  L + + R +YD  G+   +  +  G         F GF
Sbjct:    7 YEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYDQYGHVDPNQGFGGGAGGGFSGGGFSGF 93          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_LISMC (Chaperone protein dnaJ OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDS-GNRTSDFSYSTGPSQNAQDEEFYGF 477
            YEVLGV+ SA+ADEIK+AYRKL+ +YHPD+NKE  A+EKF  I  AY  L + + R +YD  G+   +  +  G         F GF
Sbjct:    7 YEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYDQYGHVDPNQGFGGGAGGGFSGGGFSGF 93          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAP7 (Chaperone protein dnaJ OS=Cyanothece sp. (strain PCC 7424) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 46/95 (48.42%), Postives = 54/95 (56.84%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSY-STGPSQNAQDEEFYGFG 480
            YE+LGV+  A  DEIKRAYR+LA KYHPDVNKE  AEE+F  I  AY  L   E+R +YD       S    S F Y   G   +  +  F GFG
Sbjct:    6 YEILGVSRDANKDEIKRAYRRLARKYHPDVNKEIGAEERFKEINRAYEILSEPETRARYDRFGEAGVSSGAGSGFEYGDMGGIADIFETIFSGFG 100          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ2_THET8 (Chaperone protein dnaJ 2 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dnaJ2 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 47/108 (43.52%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEF 543
            Y +LGV  +AT +EIKRAY++LA +YHPDVNK P AEEKF  I  AY  L + E RR YD        +Y T  +        Y F  F       +EDF +  QE F
Sbjct:    8 YAILGVPRNATQEEIKRAYKRLARQYHPDVNKSPEAEEKFKEINEAYAVLSDPEKRRIYD--------TYGTTEAPPPPPPGGYDFSGF------DVEDFSEFFQELF 101          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNJB9_HUMAN (DnaJ homolog subfamily B member 9 OS=Homo sapiens GN=DNAJB9 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  211 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKD 528
            +S Y++LGV  SA+  +IK+A+ KLA+KYHPD NK P+AE KF  I  AY TL ++  R++YD+   +   ++++G  Q      F    NF        +D FKD
Sbjct:   25 KSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHS---AFTSGKGQRGSGSSFEQSFNF------NFDDLFKD 121          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_STRR6 (Chaperone protein dnaJ OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            Y+ LGV+ +A+ADEIK+AYRKL+ KYHPD+NKEP AE+K+  ++ AY TL + + R  YD
Sbjct:    7 YDRLGVSKNASADEIKKAYRKLSKKYHPDINKEPGAEDKYKEVQEAYETLSDDQKRAAYD 66          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_STRPN (Chaperone protein dnaJ OS=Streptococcus pneumoniae GN=dnaJ PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            Y+ LGV+ +A+ADEIK+AYRKL+ KYHPD+NKEP AE+K+  ++ AY TL + + R  YD
Sbjct:    7 YDRLGVSKNASADEIKKAYRKLSKKYHPDINKEPGAEDKYKEVQEAYETLSDDQKRAAYD 66          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_PROA2 (Chaperone protein dnaJ OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 48/103 (46.60%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKE-PNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFG-NFLRDVQITIEDFF 522
            YEVLGV  SAT DEIK+AYRKLA+KYHPD N +   AEEKF     AY  L N + RR+YD            G S ++Q   F G G   L D+     D F
Sbjct:    6 YEVLGVGRSATKDEIKKAYRKLAMKYHPDKNPDNSEAEEKFKEANEAYEVLSNDDKRRRYDQFGHA-----GVGSSASSQGGPFGGGGTGDLGDIFSAFNDMF 103          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCCT (Chaperone protein dnaJ OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=dnaJ PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 47/122 (38.52%), Postives = 73/122 (59.84%), Query Frame = 1
Query:  205 RRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDS-GNRTSDFSYSTGPSQNAQD-EEFY------GFGNFLRDVQITIEDFFKDLQEEFQ 546
            +++  YEVLGV+ +A+  EI++AYRKLA +YHPD+NK P+A +K + I  A + LL+ + R++YD  G+R   F  S+G S N  D E+ +      GF +F         DFF   + ++Q
Sbjct:    2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHRA--FDNSSGFSSNFTDFEDLFSNMGSSGFSSFTN----IFSDFFGSNKSDYQ 117          
The following BLAST results are available for this feature:
BLAST of CX286802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
DNAJ_METTE1.041e-1448.31Chaperone protein dnaJ OS=Methanosarcina thermophi... [more]
DNAJ_LISMF1.041e-1447.13Chaperone protein dnaJ OS=Listeria monocytogenes s... [more]
DNAJ_LISMC1.041e-1447.13Chaperone protein dnaJ OS=Listeria monocytogenes s... [more]
DNAJ_CYAP71.041e-1448.42Chaperone protein dnaJ OS=Cyanothece sp. (strain P... [more]
DNAJ2_THET81.041e-1443.52Chaperone protein dnaJ 2 OS=Thermus thermophilus (... [more]
DNJB9_HUMAN1.359e-1439.62DnaJ homolog subfamily B member 9 OS=Homo sapiens ... [more]
DNAJ_STRR61.359e-1456.67Chaperone protein dnaJ OS=Streptococcus pneumoniae... [more]
DNAJ_STRPN1.359e-1456.67Chaperone protein dnaJ OS=Streptococcus pneumoniae... [more]
DNAJ_PROA21.359e-1446.60Chaperone protein dnaJ OS=Prosthecochloris aestuar... [more]
DNAJ_MYCCT1.359e-1438.52Chaperone protein dnaJ OS=Mycoplasma capricolum su... [more]

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Properties
Property NameValue
Genbank descriptionC01001B11Rv Veg1 Citrus clementina cDNA clone C01001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286802 ID=CX286802; Name=CX286802; organism=Citrus clementina; type=EST; length=555bp
GACAACACGCTTGTCTATCTCCCTCATCTGTTCGCAAAATCTCCTCTTTT
TCACTTTCAGAAACAAACAAACTTCACAGTAACAATACCCAGTTGCAGAT
TTAGCTATGGTGATGAATTTGGTGTCCTCTTAGTTAGTCCGCAGCCTTTT
AGAAATTTTAAGAAGAAGAGGAGAAGCAATTTTAGTACCCTTTTGAGGGC
AAGTCGCAGAGAGTCCCCTTACGAGGTTTTGGGCGTGGCTCCATCTGCGA
CTGCTGATGAAATCAAAAGGGCTTATCGGAAACTTGCTTTGAAGTATCAC
CCTGACGTTAATAAAGAGCCAAATGCAGAGGAGAAATTTATGAGGATTAA
GCATGCATACAATACATTGCTGAATTCTGAGTCACGGAGGAAATATGACT
CTGGAAATCGCACATCAGATTTTTCCTACTCCACTGGCCCAAGCCAAAAT
GCGCAGGATGAAGAATTTTACGGATTTGGTAATTTTTTGAGGGATGTCCA
AATAACAATAGAGGACTTTTTCAAAGATCTTCAAGAAGAATTCCAGAATT
GGGAA
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