CX286802

Overview
NameCX286802
Unique NameCX286802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286802_ssr61 microsatellite CX286802_ssr61:61..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_METMA (Chaperone protein dnaJ OS=Methanosarcina mazei GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDS-GNRTSDFSYSTGPSQNAQDEEFYGFGN 483
            YE+LG++  ++ ++IK+ YRKLAL+YHPD NKEP AEEKF  I  AY  L ++E R +YD  G+   D  YS        D  F GFG+
Sbjct:    8 YEILGLSKDSSVEDIKKTYRKLALQYHPDRNKEPGAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIFRGAD--FGGFGD 94          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_LACBA (Chaperone protein dnaJ OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 40/87 (45.98%), Postives = 50/87 (57.47%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFG 480
            Y VLGVA  A+ DEIK+AYRKL+ KYHPD+NK P+A EKF  ++ AY+ L + + R  YD            G     Q   F GFG
Sbjct:    7 YGVLGVAKDASQDEIKKAYRKLSKKYHPDLNKAPDAAEKFKEVQDAYDVLGDEQKRANYDQSGSADGAQGGFGGFGGGQQGGFGGFG 93          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_BACCN (Chaperone protein dnaJ OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 45/98 (45.92%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDS-GNRTSDFSYSTGPSQNAQDEE-----FYGFGNFLRD 495
            YEVLGV+ SA+ DEIK+AYR+LA KYHPDV+KE NA EKF  ++ AY  L + + R +YD  G+  S   +  G        E     F+G G+  RD
Sbjct:    7 YEVLGVSKSASKDEIKKAYRRLAKKYHPDVSKEENAVEKFKEVQEAYEVLSDEQKRAQYDQFGHAGSSQGFGGGDFGGGFGFEDIFSSFFGGGSRRRD 104          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNJB9_PONAB (DnaJ homolog subfamily B member 9 OS=Pongo abelii GN=DNAJB9 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 42/106 (39.62%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  211 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKD 528
            +S Y++LGV  SA+  +IK+A+ KLA+KYHPD NK P+AE KF  I  AY TL ++  R++YD+   +   +++ G  Q      F    NF        +D FKD
Sbjct:   25 KSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHS---AFTNGKGQRGSGSSFEQSFNF------NFDDLFKD 121          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_STRMU (Chaperone protein dnaJ OS=Streptococcus mutans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDS-GNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            Y+ LGV+  A+ DEIK+AYR+++ KYHPD+NKEP AEEK+  I+ AY+TL + + R  YD  G   ++  +  G   +  D    GFG F
Sbjct:    7 YDRLGVSKDASQDEIKKAYRRMSKKYHPDINKEPGAEEKYKEIQEAYDTLGDEQKRAAYDQYGPAGANGGFGDGSGFSGFDSS--GFGGF 94          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_LYSSC (Chaperone protein dnaJ OS=Lysinibacillus sphaericus (strain C3-41) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            YEVLG+  SAT DEIK+AYRKL+ +YHPD+NKEP A+EKF  I  AY  L + + + +YD
Sbjct:    7 YEVLGLTKSATKDEIKKAYRKLSKQYHPDLNKEPGADEKFKEIAEAYEVLSDDQKKARYD 66          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_LISMO (Chaperone protein dnaJ OS=Listeria monocytogenes GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            YEVLG++ SA+ADEIK+AYRKL+ +YHPD+NKE  A+EKF  I  AY  L + + R +YD
Sbjct:    7 YEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_LISMH (Chaperone protein dnaJ OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            YEVLG++ SA+ADEIK+AYRKL+ +YHPD+NKE  A+EKF  I  AY  L + + R +YD
Sbjct:    7 YEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_LISIN (Chaperone protein dnaJ OS=Listeria innocua GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            YEVLG++ SA+ADEIK+AYRKL+ +YHPD+NKE  A+EKF  I  AY  L + + R +YD
Sbjct:    7 YEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_BRECH (Chaperone protein dnaJ OS=Brevibacillus choshinensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            YEVLGV   A ADEIK+AYRKLA +YHPDVNK  +AEEKF  +K AY+ L   + R +YD
Sbjct:    6 YEVLGVGKGADADEIKKAYRKLARQYHPDVNKAADAEEKFKEVKEAYDVLSEPQKRAQYD 65          
The following BLAST results are available for this feature:
BLAST of CX286802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
DNAJ_METMA1.359e-1447.19Chaperone protein dnaJ OS=Methanosarcina mazei GN=... [more]
DNAJ_LACBA1.359e-1445.98Chaperone protein dnaJ OS=Lactobacillus brevis (st... [more]
DNAJ_BACCN1.359e-1445.92Chaperone protein dnaJ OS=Bacillus cereus subsp. c... [more]
DNJB9_PONAB1.775e-1439.62DnaJ homolog subfamily B member 9 OS=Pongo abelii ... [more]
DNAJ_STRMU1.775e-1444.44Chaperone protein dnaJ OS=Streptococcus mutans GN=... [more]
DNAJ_LYSSC1.775e-1458.33Chaperone protein dnaJ OS=Lysinibacillus sphaericu... [more]
DNAJ_LISMO1.775e-1458.33Chaperone protein dnaJ OS=Listeria monocytogenes G... [more]
DNAJ_LISMH1.775e-1458.33Chaperone protein dnaJ OS=Listeria monocytogenes s... [more]
DNAJ_LISIN1.775e-1458.33Chaperone protein dnaJ OS=Listeria innocua GN=dnaJ... [more]
DNAJ_BRECH1.775e-1461.67Chaperone protein dnaJ OS=Brevibacillus choshinens... [more]

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Properties
Property NameValue
Genbank descriptionC01001B11Rv Veg1 Citrus clementina cDNA clone C01001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286802 ID=CX286802; Name=CX286802; organism=Citrus clementina; type=EST; length=555bp
GACAACACGCTTGTCTATCTCCCTCATCTGTTCGCAAAATCTCCTCTTTT
TCACTTTCAGAAACAAACAAACTTCACAGTAACAATACCCAGTTGCAGAT
TTAGCTATGGTGATGAATTTGGTGTCCTCTTAGTTAGTCCGCAGCCTTTT
AGAAATTTTAAGAAGAAGAGGAGAAGCAATTTTAGTACCCTTTTGAGGGC
AAGTCGCAGAGAGTCCCCTTACGAGGTTTTGGGCGTGGCTCCATCTGCGA
CTGCTGATGAAATCAAAAGGGCTTATCGGAAACTTGCTTTGAAGTATCAC
CCTGACGTTAATAAAGAGCCAAATGCAGAGGAGAAATTTATGAGGATTAA
GCATGCATACAATACATTGCTGAATTCTGAGTCACGGAGGAAATATGACT
CTGGAAATCGCACATCAGATTTTTCCTACTCCACTGGCCCAAGCCAAAAT
GCGCAGGATGAAGAATTTTACGGATTTGGTAATTTTTTGAGGGATGTCCA
AATAACAATAGAGGACTTTTTCAAAGATCTTCAAGAAGAATTCCAGAATT
GGGAA
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