CX286802

Overview
NameCX286802
Unique NameCX286802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286802_ssr61 microsatellite CX286802_ssr61:61..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAW (Chaperone protein dnaJ OS=Staphylococcus aureus (strain MW2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YEVLG++  A+ DEIK+AYRKL+ KYHPD+NKE  A+EKF  I  AY  L +   R  YD         +     Q     +F GF  F
Sbjct:    7 YEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFG---GQGFNGSDFGGFSGF 92
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAT (Chaperone protein dnaJ OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YEVLG++  A+ DEIK+AYRKL+ KYHPD+NKE  A+EKF  I  AY  L +   R  YD         +     Q     +F GF  F
Sbjct:    7 YEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFG---GQGFNGSDFGGFSGF 92
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAS (Chaperone protein dnaJ OS=Staphylococcus aureus (strain MSSA476) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YEVLG++  A+ DEIK+AYRKL+ KYHPD+NKE  A+EKF  I  AY  L +   R  YD         +     Q     +F GF  F
Sbjct:    7 YEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFG---GQGFNGSDFGGFSGF 92
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAR (Chaperone protein dnaJ OS=Staphylococcus aureus (strain MRSA252) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YEVLG++  A+ DEIK+AYRKL+ KYHPD+NKE  A+EKF  I  AY  L +   R  YD         +     Q     +F GF  F
Sbjct:    7 YEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFG---GQGFNGSDFGGFSGF 92
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAN (Chaperone protein dnaJ OS=Staphylococcus aureus (strain N315) GN=dnaJ PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YEVLG++  A+ DEIK+AYRKL+ KYHPD+NKE  A+EKF  I  AY  L +   R  YD         +     Q     +F GF  F
Sbjct:    7 YEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFG---GQGFNGSDFGGFSGF 92
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAM (Chaperone protein dnaJ OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=dnaJ PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YEVLG++  A+ DEIK+AYRKL+ KYHPD+NKE  A+EKF  I  AY  L +   R  YD         +     Q     +F GF  F
Sbjct:    7 YEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFG---GQGFNGSDFGGFSGF 92
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAE (Chaperone protein dnaJ OS=Staphylococcus aureus (strain Newman) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YEVLG++  A+ DEIK+AYRKL+ KYHPD+NKE  A+EKF  I  AY  L +   R  YD         +     Q     +F GF  F
Sbjct:    7 YEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFG---GQGFNGSDFGGFSGF 92
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAC (Chaperone protein dnaJ OS=Staphylococcus aureus (strain COL) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YEVLG++  A+ DEIK+AYRKL+ KYHPD+NKE  A+EKF  I  AY  L +   R  YD         +     Q     +F GF  F
Sbjct:    7 YEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFG---GQGFNGSDFGGFSGF 92
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAB (Chaperone protein dnaJ OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YEVLG++  A+ DEIK+AYRKL+ KYHPD+NKE  A+EKF  I  AY  L +   R  YD         +     Q     +F GF  F
Sbjct:    7 YEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFG---GQGFNGSDFGGFSGF 92
[Close]
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_STAA9 (Chaperone protein dnaJ OS=Staphylococcus aureus (strain JH9) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YEVLG++  A+ DEIK+AYRKL+ KYHPD+NKE  A+EKF  I  AY  L +   R  YD         +     Q     +F GF  F
Sbjct:    7 YEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFG---GQGFNGSDFGGFSGF 92
The following BLAST results are available for this feature:
BLAST of CX286802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
DNAJ_STAAW2.319e-1443.82Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAT2.319e-1443.82Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAS2.319e-1443.82Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAR2.319e-1443.82Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAN2.319e-1443.82Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAM2.319e-1443.82Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAE2.319e-1443.82Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAC2.319e-1443.82Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAB2.319e-1443.82Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAA92.319e-1443.82Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]

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Properties
Property NameValue
Genbank descriptionC01001B11Rv Veg1 Citrus clementina cDNA clone C01001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286802 ID=CX286802; Name=CX286802; organism=Citrus clementina; type=EST; length=555bp
GACAACACGCTTGTCTATCTCCCTCATCTGTTCGCAAAATCTCCTCTTTT
TCACTTTCAGAAACAAACAAACTTCACAGTAACAATACCCAGTTGCAGAT
TTAGCTATGGTGATGAATTTGGTGTCCTCTTAGTTAGTCCGCAGCCTTTT
AGAAATTTTAAGAAGAAGAGGAGAAGCAATTTTAGTACCCTTTTGAGGGC
AAGTCGCAGAGAGTCCCCTTACGAGGTTTTGGGCGTGGCTCCATCTGCGA
CTGCTGATGAAATCAAAAGGGCTTATCGGAAACTTGCTTTGAAGTATCAC
CCTGACGTTAATAAAGAGCCAAATGCAGAGGAGAAATTTATGAGGATTAA
GCATGCATACAATACATTGCTGAATTCTGAGTCACGGAGGAAATATGACT
CTGGAAATCGCACATCAGATTTTTCCTACTCCACTGGCCCAAGCCAAAAT
GCGCAGGATGAAGAATTTTACGGATTTGGTAATTTTTTGAGGGATGTCCA
AATAACAATAGAGGACTTTTTCAAAGATCTTCAAGAAGAATTCCAGAATT
GGGAA
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