CX286802

Overview
NameCX286802
Unique NameCX286802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286802_ssr61 microsatellite CX286802_ssr61:61..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_METAC (Chaperone protein dnaJ OS=Methanosarcina acetivorans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.165e-14
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDS-GNRTSDFSYSTGPSQNAQDEEFYGFGN 483
            YE+LG+   A+ ++IK+ YRKLAL+YHPD NK+P AE+KF  I  AY  L ++E R +YD  G+   D  YS        D  F GFG+
Sbjct:    8 YEILGLPKDASVEDIKKTYRKLALQYHPDRNKDPGAEDKFKEISEAYAVLSDTEKRAQYDRFGHAGIDNQYSAEDIFRGAD--FGGFGD 94          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_CALS8 (Chaperone protein dnaJ OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.165e-14
Identity = 46/108 (42.59%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  202 SRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYDS-GNRTSDFSY-------STGPSQNAQDEEFYGFGNFLRDV 498
            ++++  YE+LGV  +AT +EIKRAYR+LA +YHPD N     AEEKF  I  AY  L + E RRKYD  G+   D +Y       S G +    D +F  FG+   D+
Sbjct:    2 AQKKDYYEILGVPRNATQEEIKRAYRRLAKQYHPDANPGNKEAEEKFKEINEAYEVLSDPEKRRKYDQFGHAAFDPTYGAQGGGFSGGFTGGFADFDFGSFGDIFEDL 109          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNJA1_PONAB (DnaJ homolog subfamily A member 1 OS=Pongo abelii GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQ---DEEFYGFG---------NFLRDVQITIEDFF 522
            Y+VLGV P+AT +E+K+AYRKLALKYHPD  K PN  EKF +I  AY  L +++ R  YD G   +      G    +     + F+G G         N +  + +T+ED +
Sbjct:    8 YDVLGVKPNATQEELKKAYRKLALKYHPD--KNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGGGRMQRERRGKNVVHQLSVTLEDLY 118          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_STAES (Chaperone protein dnaJ OS=Staphylococcus epidermidis (strain ATCC 12228) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            YEVLGV  SA+ DEIK+AYRKL+ KYHPD+NKE  A+EKF  I  AY  L +   R  YD
Sbjct:    7 YEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRANYD 66          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCMO (Chaperone protein dnaJ OS=Mycoplasma mobile GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 45/102 (44.12%), Postives = 57/102 (55.88%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTG------PSQNAQD----EEFYGFGNFLRD 495
            YE+LG+  SA+ DEIK+AYR LA  YHPDVNKE NAEEKF  I  AY  L +   R +Y+     + F  + G      P  NA+      +F GFG+   D
Sbjct:    6 YEILGLTKSASKDEIKKAYRTLAKTYHPDVNKETNAEEKFKEITEAYEILNDDVKREQYNQFGHAA-FDPNAGGFGGQNPFTNAEGFSGFSDFSGFGSIFTD 106          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_ANAMM (Chaperone protein dnaJ OS=Anaplasma marginale (strain St. Maries) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 48/131 (36.64%), Postives = 72/131 (54.96%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD--EEFY--GFGNFLR--------------DVQITIEDFFKDLQ 534
            YE+L V+ +A+A+EIK++YRK+  KYHPD N  +  AEEKF +I  AY  L N E R  YD       +    S F +++G S +  D  ++F+  GFG   R              DV++++ED FK ++
Sbjct:    7 YEILEVSRNASAEEIKKSYRKMVFKYHPDKNPGDKKAEEKFKKISEAYEVLSNPEKRAAYDRYGHSTFTSGGASGFDFTSGFSTDFSDIFQDFFGGGFGKSQRASSREHLRGSDLRYDVEVSLEDAFKGIK 137          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_ANAMF (Chaperone protein dnaJ OS=Anaplasma marginale (strain Florida) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 48/131 (36.64%), Postives = 72/131 (54.96%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQD--EEFY--GFGNFLR--------------DVQITIEDFFKDLQ 534
            YE+L V+ +A+A+EIK++YRK+  KYHPD N  +  AEEKF +I  AY  L N E R  YD       +    S F +++G S +  D  ++F+  GFG   R              DV++++ED FK ++
Sbjct:    7 YEILEVSRNASAEEIKKSYRKMVFKYHPDKNPGDKKAEEKFKKISEAYEVLSNPEKRAAYDRYGHSTFTSGGASGFDFTSGFSTDFSDIFQDFFGGGFGKSQRASSREHLRGSDLRYDVEVSLEDAFKGIK 137          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNJA1_HUMAN (DnaJ homolog subfamily A member 1 OS=Homo sapiens GN=DNAJA1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.811e-14
Identity = 44/114 (38.60%), Postives = 62/114 (54.39%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQ---DEEFYGFG----------NFLRDVQITIEDFF 522
            Y+VLGV P+AT +E+K+AYRKLALKYHPD  K PN  EKF +I  AY  L +++ R  YD G   +      G    +     + F+G G          N +  + +T+ED +
Sbjct:    8 YDVLGVKPNATQEELKKAYRKLALKYHPD--KNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLY 119          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_PEDPA (Chaperone protein dnaJ OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.811e-14
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            Y++LGV+  A+ DEIK+AYRKL+ KYHPD+NK P+AE+KF  +  AY  L +S+ R +YD
Sbjct:    8 YDILGVSKDASDDEIKKAYRKLSKKYHPDINKAPDAEQKFKDVNEAYEVLGDSQKRAQYD 67          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_NATPD (Chaperone protein dnaJ OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.811e-14
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 1
Query:  211 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYD 399
            E  Y VLGV+  A  DEIK+AYRK A +YHPDV+ +PNAEEKF ++K A   LL+ E RR YD
Sbjct:    3 EDFYSVLGVSRDADEDEIKQAYRKKASEYHPDVSDDPNAEEKFKQVKKAKEVLLDDEKRRMYD 65          
The following BLAST results are available for this feature:
BLAST of CX286802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
DNAJ_METAC5.165e-1446.07Chaperone protein dnaJ OS=Methanosarcina acetivora... [more]
DNAJ_CALS85.165e-1442.59Chaperone protein dnaJ OS=Caldicellulosiruptor sac... [more]
DNJA1_PONAB6.746e-1438.94DnaJ homolog subfamily A member 1 OS=Pongo abelii ... [more]
DNAJ_STAES6.746e-1460.00Chaperone protein dnaJ OS=Staphylococcus epidermid... [more]
DNAJ_MYCMO6.746e-1444.12Chaperone protein dnaJ OS=Mycoplasma mobile GN=dna... [more]
DNAJ_ANAMM6.746e-1436.64Chaperone protein dnaJ OS=Anaplasma marginale (str... [more]
DNAJ_ANAMF6.746e-1436.64Chaperone protein dnaJ OS=Anaplasma marginale (str... [more]
DNJA1_HUMAN8.811e-1438.60DnaJ homolog subfamily A member 1 OS=Homo sapiens ... [more]
DNAJ_PEDPA8.811e-1455.00Chaperone protein dnaJ OS=Pediococcus pentosaceus ... [more]
DNAJ_NATPD8.811e-1458.73Chaperone protein dnaJ OS=Natronomonas pharaonis (... [more]

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Properties
Property NameValue
Genbank descriptionC01001B11Rv Veg1 Citrus clementina cDNA clone C01001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286802 ID=CX286802; Name=CX286802; organism=Citrus clementina; type=EST; length=555bp
GACAACACGCTTGTCTATCTCCCTCATCTGTTCGCAAAATCTCCTCTTTT
TCACTTTCAGAAACAAACAAACTTCACAGTAACAATACCCAGTTGCAGAT
TTAGCTATGGTGATGAATTTGGTGTCCTCTTAGTTAGTCCGCAGCCTTTT
AGAAATTTTAAGAAGAAGAGGAGAAGCAATTTTAGTACCCTTTTGAGGGC
AAGTCGCAGAGAGTCCCCTTACGAGGTTTTGGGCGTGGCTCCATCTGCGA
CTGCTGATGAAATCAAAAGGGCTTATCGGAAACTTGCTTTGAAGTATCAC
CCTGACGTTAATAAAGAGCCAAATGCAGAGGAGAAATTTATGAGGATTAA
GCATGCATACAATACATTGCTGAATTCTGAGTCACGGAGGAAATATGACT
CTGGAAATCGCACATCAGATTTTTCCTACTCCACTGGCCCAAGCCAAAAT
GCGCAGGATGAAGAATTTTACGGATTTGGTAATTTTTTGAGGGATGTCCA
AATAACAATAGAGGACTTTTTCAAAGATCTTCAAGAAGAATTCCAGAATT
GGGAA
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