CX286824

Overview
NameCX286824
Unique NameCX286824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: SNR40_DICDI (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum GN=snrnp40 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.609e-11
Identity = 43/123 (34.96%), Postives = 70/123 (56.91%), Query Frame = 1
Query:  136 TITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV---KLVAKYKGHKRS--RFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 489
            TITS S+S+D  +LL N ++    +W+I       + +  + G + +  + +I+S +  ++   I  GS D QVYIW   +  L   LPGHSG VN V+++P  P ++AS S D+TI +  +K
Sbjct:  234 TITSTSVSKDGAYLLSNSMDNSCKIWDIRPYAPPNRNIKTFNGAQNNFEKNLIKSSWS-IDGRRIGCGSSDRQVYIWDTNTKQLQYCLPGHSGTVNEVTFHPNEP-IIASCSSDKTIYLGEIK 354          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: KTNB1_CHICK (Katanin p80 WD40-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 8.631e-11
Identity = 45/166 (27.11%), Postives = 82/166 (49.40%), Query Frame = 1
Query:   10 TLKISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNV 501
            T  I  L++++  + I+   +  ++ + D EA   +   +     I S        F+    L+ +I LW++  +   + KYK H ++   +R    G    ++AS ++D  V +W   +  ++    GHSG VN V ++P+  ++LAS S DRTIR W L+  +V
Sbjct:   63 TTPIESLQISAKEELIVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVRRK-GCIFKYKSHTQAVRCLRFSPDG---KWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVVEFHPSE-YLLASGSSDRTIRFWDLEKFHV 223          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: GBLP_NICPL (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.631e-11
Identity = 49/162 (30.25%), Postives = 80/162 (49.38%), Query Frame = 1
Query:   19 ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFV--IRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 492
            + D+ ++SDG   ++   +  L L D +A     R++   + + S + S DN+ ++    ++ I LWN  GE K + +  G   S +V  +R     L Q  I SGS D  V IW+  +C L   L GH+G VN  + +P +  + AS   D  I +W L +
Sbjct:   67 VQDVVLSSDGMFALSGSWDGELRLWDLQAGTTARRFVGHTKDVLSVAFSADNRQIVSASRDKSIRLWNTLGECKYIIQ-DGDSHSDWVSCVRFSPNNL-QPTIVSGSWDRTVKIWNLTNCKLRATLAGHTGYVNTTAVSP-DGSLCASGGKDGVILLWDLAE 225          
The following BLAST results are available for this feature:
BLAST of CX286824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SNR40_DICDI6.609e-1134.96U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
KTNB1_CHICK8.631e-1127.11Katanin p80 WD40-containing subunit B1 OS=Gallus g... [more]
GBLP_NICPL8.631e-1130.25Guanine nucleotide-binding protein subunit beta-li... [more]

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Properties
Property NameValue
Genbank descriptionC01001E01Rv Veg1 Citrus clementina cDNA clone C01001E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286824 ID=CX286824; Name=CX286824; organism=Citrus clementina; type=EST; length=544bp
GGCCAACGAACTTTAAAGATTTCTGATTTGGAAGTAACGAGTGATGGGAA
GCAGATTATAACTATGTGTAAAGAATCTGCCCTACTATTATTGGACAGAG
AAGCAAAAGTTGAGAGGTACATTGAAGAGGATCAAACAATAACATCATTC
TCATTATCTAGAGACAACAAATTCTTGCTGGTGAATCTTCTGAACCAAGA
AATCCATCTTTGGAACATAGAGGGTGAAGTCAAGCTGGTTGCCAAGTACA
AAGGTCATAAACGTAGTCGTTTTGTTATTAGGTCTTGTTTTGGTGGGCTT
GAGCAAGCTTTTATTGCCAGTGGGAGTGAGGATTCACAGGTTTATATATG
GCATAGAGCCTCATGTGACCTCATTGGGGCATTACCGGGTCATTCTGGAG
CTGTTAACTGTGTGAGCTGGAATCCAGCAAATCCTCACATGTTGGCATCA
GCCAGTGATGACCGTACTATTCGGATATGGGGCTTGAAAGATCTAAATGT
GAAGCGGAAGGATTGTCACAGCAATGGCGTCCACTATTGCAATG
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