CX286824
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: SNR40_DICDI (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum GN=snrnp40 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 6.609e-11 Identity = 43/123 (34.96%), Postives = 70/123 (56.91%), Query Frame = 1 Query: 136 TITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV---KLVAKYKGHKRS--RFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 489 TITS S+S+D +LL N ++ +W+I + + + G + + + +I+S + ++ I GS D QVYIW + L LPGHSG VN V+++P P ++AS S D+TI + +K Sbjct: 234 TITSTSVSKDGAYLLSNSMDNSCKIWDIRPYAPPNRNIKTFNGAQNNFEKNLIKSSWS-IDGRRIGCGSSDRQVYIWDTNTKQLQYCLPGHSGTVNEVTFHPNEP-IIASCSSDKTIYLGEIK 354
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: KTNB1_CHICK (Katanin p80 WD40-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2) HSP 1 Score: 66.6254 bits (161), Expect = 8.631e-11 Identity = 45/166 (27.11%), Postives = 82/166 (49.40%), Query Frame = 1 Query: 10 TLKISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNV 501 T I L++++ + I+ + ++ + D EA + + I S F+ L+ +I LW++ + + KYK H ++ +R G ++AS ++D V +W + ++ GHSG VN V ++P+ ++LAS S DRTIR W L+ +V Sbjct: 63 TTPIESLQISAKEELIVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVRRK-GCIFKYKSHTQAVRCLRFSPDG---KWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVVEFHPSE-YLLASGSSDRTIRFWDLEKFHV 223
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: GBLP_NICPL (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 8.631e-11 Identity = 49/162 (30.25%), Postives = 80/162 (49.38%), Query Frame = 1 Query: 19 ISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFV--IRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 492 + D+ ++SDG ++ + L L D +A R++ + + S + S DN+ ++ ++ I LWN GE K + + G S +V +R L Q I SGS D V IW+ +C L L GH+G VN + +P + + AS D I +W L + Sbjct: 67 VQDVVLSSDGMFALSGSWDGELRLWDLQAGTTARRFVGHTKDVLSVAFSADNRQIVSASRDKSIRLWNTLGECKYIIQ-DGDSHSDWVSCVRFSPNNL-QPTIVSGSWDRTVKIWNLTNCKLRATLAGHTGYVNTTAVSP-DGSLCASGGKDGVILLWDLAE 225 The following BLAST results are available for this feature:
BLAST of CX286824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX286824 ID=CX286824; Name=CX286824; organism=Citrus clementina; type=EST; length=544bpback to top |