CX286833

Overview
NameCX286833
Unique NameCX286833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H36_STYLE (Histone H3-6 (Fragment) OS=Stylonychia lemnae GN=H3-6 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 6.597e-48
Identity = 96/114 (84.21%), Postives = 106/114 (92.98%), Query Frame = 3
Query:   66 STGGKAPRKQLATKAARKS--APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP 401
            +TGGKAPRK +A K A+KS  A  TGGVKKPHR+RPGTVALREIR++QKSTELLIRKLPFQRLVREIAQ++K+DLRFQS AVLALQEAAEAY+VGLFEDTNLCAIHAKRVTIMP
Sbjct:    1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMP 114          
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H35_STYLE (Histone H3-5 (Fragment) OS=Stylonychia lemnae GN=H3-5 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.470e-47
Identity = 97/114 (85.09%), Postives = 104/114 (91.23%), Query Frame = 3
Query:   66 STGGKAPRKQLATKAARKSAPTTG--GVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP 401
            +TG KAPRKQLA KAARKS       GVKKPHR+RPGTVALREIR++QKSTELLIRKLPFQRLVREIAQ++K+DLRFQS AVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
Sbjct:    1 NTGAKAPRKQLANKAARKSTNVNAVSGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP 114          
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H33L1_CAEEL (Histone H3.3-like type 1 OS=Caenorhabditis elegans GN=his-70 PE=2 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 1.470e-47
Identity = 98/126 (77.78%), Postives = 108/126 (85.71%), Query Frame = 3
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTK TARKS GGKAPRK LATKAARK  P  G VKK  RYRP + AL+EIRKYQKSTELL+RKLPFQRLVRE+AQ+   ++RFQS A+ AL EAAEAYL+GLFEDTNLCAIHAKRVTIMPKD+Q
Sbjct:    1 MARTKHTARKSFGGKAPRKSLATKAARKVFPVDGQVKK--RYRPSSNALKEIRKYQKSTELLVRKLPFQRLVREVAQEIMPNVRFQSAAIQALHEAAEAYLIGLFEDTNLCAIHAKRVTIMPKDMQ 124          
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H38_STYLE (Histone H3-8 (Fragment) OS=Stylonychia lemnae GN=H3-8 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.919e-47
Identity = 94/113 (83.19%), Postives = 102/113 (90.27%), Query Frame = 3
Query:   66 STGGKAPRKQLATKAARKSA-PTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP 401
            +TG KAPRK LA KAARK+A P   G+KKPHRYRPGTVALREIRKYQKST+LLIRKLPFQRLVREIA ++K DLRFQS AVLALQEAAEAY++GLFEDTNLCAIH KRVTIMP
Sbjct:    1 NTGAKAPRKHLANKAARKTAAPANAGIKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIASEYKNDLRFQSSAVLALQEAAEAYMIGLFEDTNLCAIHGKRVTIMP 113          
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H33_STYLE (Histone H3-3 (Fragment) OS=Stylonychia lemnae GN=H3-3 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.507e-47
Identity = 96/114 (84.21%), Postives = 104/114 (91.23%), Query Frame = 3
Query:   66 STGGKAPRKQLATKAARKS--APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP 401
            +TGGKAPRK +A K A+KS  A  TGGVKKPHR+RPGTVALREIR++QKSTELLIRKLPFQRLVREIA +FK DLRFQS AVLALQEA+EAYLVGLFEDTNLCAIHAKRVTIMP
Sbjct:    1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMP 114          
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H39_STYLE (Histone H3-2 (Fragment) OS=Stylonychia lemnae GN=H3-2 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.772e-46
Identity = 95/114 (83.33%), Postives = 103/114 (90.35%), Query Frame = 3
Query:   66 STGGKAPRKQLATKAARKS--APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP 401
            +TGGKAPRK +A K A+KS  A  TGGVKKPHR+RPGTVALREIR++QKSTELLIRKLPFQRLVREIA +FK DLRFQS AVLALQEA+EAYLVGLFEDTNL AIHAKRVTIMP
Sbjct:    1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLAAIHAKRVTIMP 114          
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H37_STYLE (Histone H3-7 (Fragment) OS=Stylonychia lemnae GN=H3-7 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.772e-46
Identity = 95/114 (83.33%), Postives = 103/114 (90.35%), Query Frame = 3
Query:   66 STGGKAPRKQLATKAARKS--APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP 401
            +TGGKAPRK +A K A+KS  A  TGGVKKPHR+RPGTVALREIR++QKSTELLIRKLPFQRLVREIA +FK DLRFQS AVLALQEA+EAYLVGLFEDTNL AIHAKRVTIMP
Sbjct:    1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLAAIHAKRVTIMP 114          
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H3_GUITH (Histone H3 OS=Guillardia theta PE=3 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 1.521e-44
Identity = 92/125 (73.60%), Postives = 105/125 (84.00%), Query Frame = 3
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDI 410
            MARTKQTARK+ GG     +++ K A+        +KK HRY+PGTVALREIRKYQKST LLIRKLPFQRLVRE+AQD+K+DLRFQ+ AVLALQEA+E+YLV LFEDTNLCAIHAKRVTIMPKDI
Sbjct:    1 MARTKQTARKTVGGDI-NSRISEKRAKSDNSKNIDLKKVHRYKPGTVALREIRKYQKSTNLLIRKLPFQRLVRELAQDYKSDLRFQNSAVLALQEASESYLVNLFEDTNLCAIHAKRVTIMPKDI 124          
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H3L4_ARATH (Histone H3-like 4 OS=Arabidopsis thaliana GN=At5g12910 PE=2 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 3.746e-43
Identity = 90/126 (71.43%), Postives = 106/126 (84.13%), Query Frame = 3
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MAR+ QTARK+TGGKAP    A +  + S P    +KKP+RY+PGTVALREIRKYQK+T+L+IRKLPFQRLV+EIAQ  K DLRFQ+ AV ALQEAAEA++VG+FEDTNLCA+HAKR TIMPKDIQ
Sbjct:    1 MARSNQTARKATGGKAPH--FAMRVWQHSTPP---LKKPYRYKPGTVALREIRKYQKTTDLVIRKLPFQRLVKEIAQSLKADLRFQTGAVSALQEAAEAFMVGMFEDTNLCAMHAKRSTIMPKDIQ 121          
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H3L_BOVIN (Histone H3-like OS=Bos taurus PE=2 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 6.612e-40
Identity = 85/119 (71.43%), Postives = 97/119 (81.51%), Query Frame = 3
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFED---TNLCAIHAK 383
            MARTK+TA KSTGGK PRKQL  +AA KSAP+T G+ KPHRYRPGTVALREIR YQKST  LIRKLPFQRLVREIAQDFKTDL+FQS A+  LQEA+EAYLV   E    +NL  ++++
Sbjct:    1 MARTKRTAYKSTGGKVPRKQLVIEAAGKSAPSTSGMTKPHRYRPGTVALREIRPYQKSTHFLIRKLPFQRLVREIAQDFKTDLKFQSAAIRTLQEASEAYLVVFLESKQHSNLARMYSQ 119          
The following BLAST results are available for this feature:
BLAST of CX286833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H36_STYLE6.597e-4884.21Histone H3-6 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H35_STYLE1.470e-4785.09Histone H3-5 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H33L1_CAEEL1.470e-4777.78Histone H3.3-like type 1 OS=Caenorhabditis elegans... [more]
H38_STYLE1.919e-4783.19Histone H3-8 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H33_STYLE2.507e-4784.21Histone H3-3 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H39_STYLE2.772e-4683.33Histone H3-2 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H37_STYLE2.772e-4683.33Histone H3-7 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H3_GUITH1.521e-4473.60Histone H3 OS=Guillardia theta PE=3 SV=3[more]
H3L4_ARATH3.746e-4371.43Histone H3-like 4 OS=Arabidopsis thaliana GN=At5g1... [more]
H3L_BOVIN6.612e-4071.43Histone H3-like OS=Bos taurus PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC01001E10Rv Veg1 Citrus clementina cDNA clone C01001E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286833 ID=CX286833; Name=CX286833; organism=Citrus clementina; type=EST; length=536bp
GAGAAATTGAGTGGAAGAGTTGAAGAAACTCAGAGATGGCCCGTACCAAG
CAAACTGCGCGTAAGTCAACCGGAGGAAAGGCTCCTAGGAAGCAACTTGC
TACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGGTGTTAAGAAGC
CTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAATTCGCAAGTAC
CAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTCCAGAGACTTGT
TCGTGAAATTGCTCAGGACTTTAAGACTGATCTGCGTTTCCAGAGCCATG
CAGTACTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGTTGGTCTCTTC
GAGGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTCACTATTATGCC
CAAGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGTGCTTAAGCGT
AATTGCTGCTTGCTTCAATTGAATGACTGGAAGGGAAGGGGGAAGTTGTA
ATGTGTTAATTTGTACGTGGGGGTTGGTGGGGGTAG
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