CX286833

Overview
NameCX286833
Unique NameCX286833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H3L1_LILLO (Histone H3-like 1 OS=Lilium longiflorum GN=gH3 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 9.291e-18
Identity = 51/124 (41.13%), Postives = 73/124 (58.87%), Query Frame = 3
Query:   48 KQTARKSTGGKAPRKQLATKAARK--SAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            +Q   +    +APR Q   +  ++  +AP     ++P R+RPGTVALREIR+ Q+S   LI   PF RLVRE+A +F  D RF +   + L+E  E  LV  F +  +C+IHAKR+ I  KD +
Sbjct:   20 RQQPTEEPQDEAPRNQGRQQQQQRPPAAP-----RRPRRFRPGTVALREIRRIQRSNVPLIPHSPFMRLVRELAAEFLDDCRFAAETFIMLKEVVEDELVNHFGNVQICSIHAKRIIITVKDFK 138          
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H3L2_LILLO (Histone H3-like 2 OS=Lilium longiflorum GN=gcH3 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 3.531e-17
Identity = 53/101 (52.48%), Postives = 61/101 (60.40%), Query Frame = 3
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKS-APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY 335
            MAR K TAR STGGKAPRKQLA+KA RK+  P T GVK+P     G                  RKLPFQ LVR+I QD KT LRF++H+V  L+E  E Y
Sbjct:    1 MARMKHTARMSTGGKAPRKQLASKALRKAPPPPTKGVKQPTTTTSGKWRFARFH----------RKLPFQGLVRKIWQDLKTHLRFKNHSVPPLEEVTEVY 91          
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H32_TETTR (Histone H3.2 (Fragment) OS=Tetrahymena tropicalis PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 158
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H32_TETSO (Histone H3.2 (Fragment) OS=Tetrahymena sonneborni PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 158
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H32_TETRO (Histone H3.2 (Fragment) OS=Tetrahymena rostrata PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 158
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H32_TETPR (Histone H3.2 (Fragment) OS=Tetrahymena paravorax PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 158
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H32_TETPI (Histone H3.2 (Fragment) OS=Tetrahymena pigmentosa PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 158
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H32_TETPA (Histone H3.2 (Fragment) OS=Tetrahymena patula PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 158
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H32_TETNI (Histone H3.2 (Fragment) OS=Tetrahymena nippisingi PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 158
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H32_TETNA (Histone H3.2 (Fragment) OS=Tetrahymena nanneyi PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 158
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
The following BLAST results are available for this feature:
BLAST of CX286833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3L1_LILLO9.291e-1841.13Histone H3-like 1 OS=Lilium longiflorum GN=gH3 PE=... [more]
H3L2_LILLO3.531e-1752.48Histone H3-like 2 OS=Lilium longiflorum GN=gcH3 PE... [more]
H32_TETTR2.797e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena tropicalis ... [more]
H32_TETSO2.797e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena sonneborni ... [more]
H32_TETRO2.797e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena rostrata PE... [more]
H32_TETPR2.797e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena paravorax P... [more]
H32_TETPI2.797e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena pigmentosa ... [more]
H32_TETPA2.797e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena patula PE=3... [more]
H32_TETNI2.797e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena nippisingi ... [more]
H32_TETNA2.797e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena nanneyi PE=... [more]

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Properties
Property NameValue
Genbank descriptionC01001E10Rv Veg1 Citrus clementina cDNA clone C01001E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286833 ID=CX286833; Name=CX286833; organism=Citrus clementina; type=EST; length=536bp
GAGAAATTGAGTGGAAGAGTTGAAGAAACTCAGAGATGGCCCGTACCAAG
CAAACTGCGCGTAAGTCAACCGGAGGAAAGGCTCCTAGGAAGCAACTTGC
TACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGGTGTTAAGAAGC
CTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAATTCGCAAGTAC
CAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTCCAGAGACTTGT
TCGTGAAATTGCTCAGGACTTTAAGACTGATCTGCGTTTCCAGAGCCATG
CAGTACTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGTTGGTCTCTTC
GAGGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTCACTATTATGCC
CAAGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGTGCTTAAGCGT
AATTGCTGCTTGCTTCAATTGAATGACTGGAAGGGAAGGGGGAAGTTGTA
ATGTGTTAATTTGTACGTGGGGGTTGGTGGGGGTAG
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