CX286833

Overview
NameCX286833
Unique NameCX286833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H32_CHLRE (Histone H3 type 2 OS=Chlamydomonas reinhardtii GN=ch3-II PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.048e-61
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 125
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H33_PONAB (Histone H3.3 OS=Pongo abelii PE=2 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 1.369e-61
Identity = 119/126 (94.44%), Postives = 123/126 (97.62%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRL REIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLAREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H3_STRPU (Histone H3, embryonic OS=Strongylocentrotus purpuratus PE=2 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 1.788e-61
Identity = 119/126 (94.44%), Postives = 123/126 (97.62%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLV LFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVRLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H32_LILLO (Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV=3)

HSP 1 Score: 234.958 bits (598), Expect = 1.788e-61
Identity = 119/126 (94.44%), Postives = 122/126 (96.83%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK DLRFQS AV ALQEA+E+YLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKADLRFQSSAVAALQEASESYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H3_CAEEL (Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1 SV=4)

HSP 1 Score: 234.572 bits (597), Expect = 2.335e-61
Identity = 118/126 (93.65%), Postives = 122/126 (96.83%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP +GGVKKPHRYRPGTVALREIR+YQKSTELLIR+ PFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H31_CHLRE (Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=ch3-I PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 2.335e-61
Identity = 121/126 (96.03%), Postives = 123/126 (97.62%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKYQKSTEL+IRKLPFQRLVREIAQDFKTDLRFQS AVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELVIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 125
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H3_GRIJA (Histone H3 OS=Griffithsia japonica PE=2 SV=3)

HSP 1 Score: 234.187 bits (596), Expect = 3.050e-61
Identity = 117/126 (92.86%), Postives = 124/126 (98.41%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARKSAP +GGVKKPHR+RPGTVALREIR++QKSTELL+RKLPFQRLVREIAQDFK+DLRFQS AVLALQEAAEAY+VGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRFRPGTVALREIRRFQKSTELLVRKLPFQRLVREIAQDFKSDLRFQSSAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H31T_HUMAN (Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3)

HSP 1 Score: 233.802 bits (595), Expect = 3.984e-61
Identity = 117/126 (92.86%), Postives = 121/126 (96.03%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATK ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRL+REIAQDFKTDLRFQS AV+ALQEA E+YLVGLFEDTNLC IHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H3L_XENLA (Histone H3-like OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 3.372e-60
Identity = 116/126 (92.06%), Postives = 120/126 (95.24%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQL TKAA+K AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ  AV+ALQEA+EAYLV LFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQRSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CX286833 vs. ExPASy Swiss-Prot
Match: H33_CHLRE (Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=ch3-IV PE=1 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 3.372e-60
Identity = 120/126 (95.24%), Postives = 122/126 (96.83%), Query Frame = 3 
Query:   36 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 413
            MARTKQTARKSTGGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEAAEAYLVGLFEDTNLCAI AKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVVALQEAAEAYLVGLFEDTNLCAITAKRVTIMPKDIQ 125
The following BLAST results are available for this feature:
BLAST of CX286833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H32_CHLRE1.048e-6196.83Histone H3 type 2 OS=Chlamydomonas reinhardtii GN=... [more]
H33_PONAB1.369e-6194.44Histone H3.3 OS=Pongo abelii PE=2 SV=3[more]
H3_STRPU1.788e-6194.44Histone H3, embryonic OS=Strongylocentrotus purpur... [more]
H32_LILLO1.788e-6194.44Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV... [more]
H3_CAEEL2.335e-6193.65Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1... [more]
H31_CHLRE2.335e-6196.03Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=... [more]
H3_GRIJA3.050e-6192.86Histone H3 OS=Griffithsia japonica PE=2 SV=3[more]
H31T_HUMAN3.984e-6192.86Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3[more]
H3L_XENLA3.372e-6092.06Histone H3-like OS=Xenopus laevis PE=1 SV=2[more]
H33_CHLRE3.372e-6095.24Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01001E10Rv Veg1 Citrus clementina cDNA clone C01001E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286833 ID=CX286833; Name=CX286833; organism=Citrus clementina; type=EST; length=536bp
GAGAAATTGAGTGGAAGAGTTGAAGAAACTCAGAGATGGCCCGTACCAAG
CAAACTGCGCGTAAGTCAACCGGAGGAAAGGCTCCTAGGAAGCAACTTGC
TACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGGTGTTAAGAAGC
CTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAATTCGCAAGTAC
CAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTCCAGAGACTTGT
TCGTGAAATTGCTCAGGACTTTAAGACTGATCTGCGTTTCCAGAGCCATG
CAGTACTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGTTGGTCTCTTC
GAGGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTCACTATTATGCC
CAAGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGTGCTTAAGCGT
AATTGCTGCTTGCTTCAATTGAATGACTGGAAGGGAAGGGGGAAGTTGTA
ATGTGTTAATTTGTACGTGGGGGTTGGTGGGGGTAG
back to top