CX286838

Overview
NameCX286838
Unique NameCX286838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286838 vs. ExPASy Swiss-Prot
Match: SPK1_CAEBR (Serine/threonine-protein kinase spk-1 OS=Caenorhabditis briggsae GN=spk-1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.976e-17
Identity = 51/138 (36.96%), Postives = 76/138 (55.07%), Query Frame = 2
Query:    2 KDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEERPTAAQCLSHPWM--SAGPQLREPSMAA-----GEPRETEGSIPERKRREQDEREAME 394
            +DEDHLA + ELLG +   I   G++ R+FF+++G+L HI  L+ W + +VL +KY+++  DA+    FL P+LDF  E+R TA   L HP++    G   R+P +       G+  E      E  R E D   A E
Sbjct:  591 RDEDHLAHISELLGQISPSIYKKGKHWREFFHKNGNLLHIHNLKPWSLYEVLRQKYEWSHEDAQQFESFLRPMLDFDQEKRATANDALKHPFLLPFGGKAPRDPEVLQRLYPDGQVPEALDGNQEVYRDENDSNSASE 728          
BLAST of CX286838 vs. ExPASy Swiss-Prot
Match: SPK1_CAEEL (Serine/threonine-protein kinase spk-1 OS=Caenorhabditis elegans GN=spk-1 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.581e-17
Identity = 54/154 (35.06%), Postives = 81/154 (52.60%), Query Frame = 2
Query:    2 KDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEERPTAAQCLSHPWM----------SAGPQLREPSMAAG-EPRETEGS-IPERKRREQDEREAMEVGVGNMDINGA 427
            +DEDHLA + ELLG +P  I   G++ R+FF+++G L HI +L+ W + +VL +KY+++  DA+    FL P+LDF  E+R TA   L HP++             P+L       G  P   +G+   E  R E D R A E    +    G+
Sbjct:  812 RDEDHLAHISELLGAIPPSIYKKGKHWREFFHKNGHLLHIHQLKPWSLYEVLRQKYEWSHEDAQQFESFLRPMLDFDQEKRSTAKIALKHPFLLPFGGRAPKSDCPPELLSKMFPDGLIPEPFDGNEHQEVYRDENDSRSASERSANSRSAGGS 965          
The following BLAST results are available for this feature:
BLAST of CX286838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SPK1_CAEBR1.976e-1736.96Serine/threonine-protein kinase spk-1 OS=Caenorhab... [more]
SPK1_CAEEL2.581e-1735.06Serine/threonine-protein kinase spk-1 OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionC01001F04Rv Veg1 Citrus clementina cDNA clone C01001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286838 ID=CX286838; Name=CX286838; organism=Citrus clementina; type=EST; length=430bp
TAAGGATGAGGATCACTTGGCACTGATGATGGAGCTTCTCGGGATGATGC
CACGCAAGATTGCATTGGGTGGTCGCTATTCCCGTGATTTCTTCAACAGA
CATGGGGATTTGAGGCACATCCGTCGTCTACGTTTTTGGCCTATGAATAA
GGTCCTTGTAGAGAAGTACGACTTTAACGAGCGAGATGCAAAGGACATGG
CTGACTTCCTTGTTCCAATACTTGATTTCGTTCCTGAAGAGAGACCAACT
GCAGCCCAATGTCTCAGTCATCCATGGATGAGTGCAGGACCTCAACTGCG
TGAGCCTTCTATGGCTGCTGGTGAGCCACGGGAGACAGAAGGTAGTATAC
CTGAAAGAAAGAGGAGGGAGCAGGACGAGAGGGAGGCTATGGAAGTGGGA
GTGGGGAATATGGACATTAATGGGGCTTCA
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