CX286853 | Citrus Genome Database

Overview


Name	CX286853
Unique Name	CX286853
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	621

Libraries


Library Name	Type
Veg1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_CARPA (ATP synthase subunit c, chloroplastic OS=Carica papaya GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.778e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_CALFG (ATP synthase subunit c, chloroplastic OS=Calycanthus floridus var. glaucus GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.778e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_BUXMI (ATP synthase subunit c, chloroplastic OS=Buxus microphylla GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.778e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_BARVE (ATP synthase subunit c, chloroplastic OS=Barbarea verna GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.778e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_ANTFO (ATP synthase subunit c, chloroplastic OS=Anthoceros formosae GN=atpH PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.778e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_AMBTC (ATP synthase subunit c, chloroplastic OS=Amborella trichopoda GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.778e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_AETGR (ATP synthase subunit c, chloroplastic OS=Aethionema grandiflora GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.778e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_AETCO (ATP synthase subunit c, chloroplastic OS=Aethionema cordifolium GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.778e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_ADICA (ATP synthase subunit c, chloroplastic OS=Adiantum capillus-veneris GN=atpH PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.778e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_ACOCL (ATP synthase subunit c, chloroplastic OS=Acorus calamus GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.778e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

The following BLAST results are available for this feature:

BLAST of CX286853 vs. ExPASy Swiss-Prot

BLAST of CX286853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173


Match Name	E-value	Identity	Description
ATPH_CARPA	2.778e-25	80.25	ATP synthase subunit c, chloroplastic OS=Carica pa...	[more]
ATPH_CALFG	2.778e-25	80.25	ATP synthase subunit c, chloroplastic OS=Calycanth...	[more]
ATPH_BUXMI	2.778e-25	80.25	ATP synthase subunit c, chloroplastic OS=Buxus mic...	[more]
ATPH_BARVE	2.778e-25	80.25	ATP synthase subunit c, chloroplastic OS=Barbarea ...	[more]
ATPH_ANTFO	2.778e-25	80.25	ATP synthase subunit c, chloroplastic OS=Anthocero...	[more]
ATPH_AMBTC	2.778e-25	80.25	ATP synthase subunit c, chloroplastic OS=Amborella...	[more]
ATPH_AETGR	2.778e-25	80.25	ATP synthase subunit c, chloroplastic OS=Aethionem...	[more]
ATPH_AETCO	2.778e-25	80.25	ATP synthase subunit c, chloroplastic OS=Aethionem...	[more]
ATPH_ADICA	2.778e-25	80.25	ATP synthase subunit c, chloroplastic OS=Adiantum ...	[more]
ATPH_ACOCL	2.778e-25	80.25	ATP synthase subunit c, chloroplastic OS=Acorus ca...	[more]

Pages

Properties


Property Name	Value
Genbank description	C01001G08Rv Veg1 Citrus clementina cDNA clone C01001G08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX286853 ID=CX286853; Name=CX286853; organism=Citrus clementina; type=EST; length=621bp
TTTTTCTTTATTTTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTG
CCGCTTCCGTTATTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGA
CCTGGAGTTGGTCAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGC
GAGACAGCCCGAGGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTC
TGGCTTTTATGGAAGCTTTAACAATTTATGGGCTGGTTGTAGCATTAGCA
CTTTTATTTGCGAATCCTTTTGTTTAATCCTAGAAATAGGAAGGGCAATT
TACAATTTACTTATTTTTTTTTCTCTTATTTATTATATCTGTGTTTCTGG
CTTTTTTGAATTCTATCAAGATTTAACTCCTCCAATTGGAAGGACTGATT
TGAGGATGGGGAATTAGGATAGGCATACCAGTTCGCCTTTTTCTTTCCCT
TTCTTAGTCTAAAGGAAACCCTCTTTTTAAGTGATGCTGCAACAAACGAG
GGGTTTTGCAATTGACAGGAGTCCCGGCCCCTAATACTAATAAGTATCCC
TCTTATCGGGAATCCCCAATTGCCAATTCAAAGAAAGGATTTCGAAATCG
AATTTTTGACCCTGTTTCGAA