CX286853

Overview
NameCX286853
Unique NameCX286853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_ACOAM (ATP synthase subunit c, chloroplastic OS=Acorus americanus GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.778e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_OLIPU (ATP synthase subunit c, chloroplastic OS=Olimarabidopsis pumila GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.629e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_DRANE (ATP synthase subunit c, chloroplastic OS=Draba nemorosa GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.629e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_CRUWA (ATP synthase subunit c, chloroplastic OS=Crucihimalaya wallichii GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.629e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_CAPBU (ATP synthase subunit c, chloroplastic OS=Capsella bursa-pastoris GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.629e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_ARATH (ATP synthase subunit c, chloroplastic OS=Arabidopsis thaliana GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.629e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_ARAHI (ATP synthase subunit c, chloroplastic OS=Arabis hirsuta GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.629e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_WELMI (ATP synthase subunit c, chloroplastic OS=Welwitschia mirabilis GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.739e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQALEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_SOYBN (ATP synthase subunit c, chloroplastic OS=Glycine max GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.739e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_PHAVU (ATP synthase subunit c, chloroplastic OS=Phaseolus vulgaris GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.739e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
The following BLAST results are available for this feature:
BLAST of CX286853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_ACOAM2.778e-2580.25ATP synthase subunit c, chloroplastic OS=Acorus am... [more]
ATPH_OLIPU3.629e-2579.01ATP synthase subunit c, chloroplastic OS=Olimarabi... [more]
ATPH_DRANE3.629e-2579.01ATP synthase subunit c, chloroplastic OS=Draba nem... [more]
ATPH_CRUWA3.629e-2579.01ATP synthase subunit c, chloroplastic OS=Crucihima... [more]
ATPH_CAPBU3.629e-2579.01ATP synthase subunit c, chloroplastic OS=Capsella ... [more]
ATPH_ARATH3.629e-2579.01ATP synthase subunit c, chloroplastic OS=Arabidops... [more]
ATPH_ARAHI3.629e-2579.01ATP synthase subunit c, chloroplastic OS=Arabis hi... [more]
ATPH_WELMI4.739e-2579.01ATP synthase subunit c, chloroplastic OS=Welwitsch... [more]
ATPH_SOYBN4.739e-2579.01ATP synthase subunit c, chloroplastic OS=Glycine m... [more]
ATPH_PHAVU4.739e-2579.01ATP synthase subunit c, chloroplastic OS=Phaseolus... [more]

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Properties
Property NameValue
Genbank descriptionC01001G08Rv Veg1 Citrus clementina cDNA clone C01001G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286853 ID=CX286853; Name=CX286853; organism=Citrus clementina; type=EST; length=621bp
TTTTTCTTTATTTTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTG
CCGCTTCCGTTATTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGA
CCTGGAGTTGGTCAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGC
GAGACAGCCCGAGGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTC
TGGCTTTTATGGAAGCTTTAACAATTTATGGGCTGGTTGTAGCATTAGCA
CTTTTATTTGCGAATCCTTTTGTTTAATCCTAGAAATAGGAAGGGCAATT
TACAATTTACTTATTTTTTTTTCTCTTATTTATTATATCTGTGTTTCTGG
CTTTTTTGAATTCTATCAAGATTTAACTCCTCCAATTGGAAGGACTGATT
TGAGGATGGGGAATTAGGATAGGCATACCAGTTCGCCTTTTTCTTTCCCT
TTCTTAGTCTAAAGGAAACCCTCTTTTTAAGTGATGCTGCAACAAACGAG
GGGTTTTGCAATTGACAGGAGTCCCGGCCCCTAATACTAATAAGTATCCC
TCTTATCGGGAATCCCCAATTGCCAATTCAAAGAAAGGATTTCGAAATCG
AATTTTTGACCCTGTTTCGAA
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