CX286853 | Citrus Genome Database

Overview


Name	CX286853
Unique Name	CX286853
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	621

Libraries


Library Name	Type
Veg1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_LOTJA (ATP synthase subunit c, chloroplastic OS=Lotus japonicus GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.739e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_GNEPA (ATP synthase subunit c, chloroplastic OS=Gnetum parvifolium GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.739e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQALEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_WHEAT (ATP synthase subunit c, chloroplastic OS=Triticum aestivum GN=atpH PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_STAPU (ATP synthase subunit c, chloroplastic OS=Staurastrum punctulatum GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPVISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_SPIOL (ATP synthase subunit c, chloroplastic OS=Spinacia oleracea GN=atpH PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_SORBI (ATP synthase subunit c, chloroplastic OS=Sorghum bicolor GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_SOLBU (ATP synthase subunit c, chloroplastic OS=Solanum bulbocastanum GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_SACOF (ATP synthase subunit c, chloroplastic OS=Saccharum officinarum GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_SACHY (ATP synthase subunit c, chloroplastic OS=Saccharum hybrid GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_ORYSJ (ATP synthase subunit c, chloroplastic OS=Oryza sativa subsp. japonica GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

The following BLAST results are available for this feature:

BLAST of CX286853 vs. ExPASy Swiss-Prot

BLAST of CX286853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173


Match Name	E-value	Identity	Description
ATPH_LOTJA	4.739e-25	79.01	ATP synthase subunit c, chloroplastic OS=Lotus jap...	[more]
ATPH_GNEPA	4.739e-25	79.01	ATP synthase subunit c, chloroplastic OS=Gnetum pa...	[more]
ATPH_WHEAT	6.190e-25	79.01	ATP synthase subunit c, chloroplastic OS=Triticum ...	[more]
ATPH_STAPU	6.190e-25	79.01	ATP synthase subunit c, chloroplastic OS=Staurastr...	[more]
ATPH_SPIOL	6.190e-25	79.01	ATP synthase subunit c, chloroplastic OS=Spinacia ...	[more]
ATPH_SORBI	6.190e-25	79.01	ATP synthase subunit c, chloroplastic OS=Sorghum b...	[more]
ATPH_SOLBU	6.190e-25	79.01	ATP synthase subunit c, chloroplastic OS=Solanum b...	[more]
ATPH_SACOF	6.190e-25	79.01	ATP synthase subunit c, chloroplastic OS=Saccharum...	[more]
ATPH_SACHY	6.190e-25	79.01	ATP synthase subunit c, chloroplastic OS=Saccharum...	[more]
ATPH_ORYSJ	6.190e-25	79.01	ATP synthase subunit c, chloroplastic OS=Oryza sat...	[more]

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Properties


Property Name	Value
Genbank description	C01001G08Rv Veg1 Citrus clementina cDNA clone C01001G08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX286853 ID=CX286853; Name=CX286853; organism=Citrus clementina; type=EST; length=621bp
TTTTTCTTTATTTTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTG
CCGCTTCCGTTATTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGA
CCTGGAGTTGGTCAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGC
GAGACAGCCCGAGGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTC
TGGCTTTTATGGAAGCTTTAACAATTTATGGGCTGGTTGTAGCATTAGCA
CTTTTATTTGCGAATCCTTTTGTTTAATCCTAGAAATAGGAAGGGCAATT
TACAATTTACTTATTTTTTTTTCTCTTATTTATTATATCTGTGTTTCTGG
CTTTTTTGAATTCTATCAAGATTTAACTCCTCCAATTGGAAGGACTGATT
TGAGGATGGGGAATTAGGATAGGCATACCAGTTCGCCTTTTTCTTTCCCT
TTCTTAGTCTAAAGGAAACCCTCTTTTTAAGTGATGCTGCAACAAACGAG
GGGTTTTGCAATTGACAGGAGTCCCGGCCCCTAATACTAATAAGTATCCC
TCTTATCGGGAATCCCCAATTGCCAATTCAAAGAAAGGATTTCGAAATCG
AATTTTTGACCCTGTTTCGAA