CX286853 | Citrus Genome Database

Overview


Name	CX286853
Unique Name	CX286853
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	621

Libraries


Library Name	Type
Veg1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_ORYSI (ATP synthase subunit c, chloroplastic OS=Oryza sativa subsp. indica GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_ORYSA (ATP synthase subunit c, chloroplastic OS=Oryza sativa GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_ORYNI (ATP synthase subunit c, chloroplastic OS=Oryza nivara GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_MAIZE (ATP synthase subunit c, chloroplastic OS=Zea mays GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_LOLPR (ATP synthase subunit c, chloroplastic OS=Lolium perenne GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_HORVU (ATP synthase subunit c, chloroplastic OS=Hordeum vulgare GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_CRYJA (ATP synthase subunit c, chloroplastic OS=Cryptomeria japonica GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLISAASVIAAGL+VGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLSVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_CHAVU (ATP synthase subunit c, chloroplastic OS=Chara vulgaris GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLISAASVIAAGLAVGL+SI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLSSIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_CERDE (ATP synthase subunit c, chloroplastic OS=Ceratophyllum demersum GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLIS+ASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISSASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_BRADI (ATP synthase subunit c, chloroplastic OS=Brachypodium distachyon GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

The following BLAST results are available for this feature:

BLAST of CX286853 vs. ExPASy Swiss-Prot

BLAST of CX286853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173


Match Name	E-value	Identity	Description
ATPH_ORYSI	6.190e-25	79.01	ATP synthase subunit c, chloroplastic OS=Oryza sat...	[more]
ATPH_ORYSA	6.190e-25	79.01	ATP synthase subunit c, chloroplastic OS=Oryza sat...	[more]
ATPH_ORYNI	6.190e-25	79.01	ATP synthase subunit c, chloroplastic OS=Oryza niv...	[more]
ATPH_MAIZE	6.190e-25	79.01	ATP synthase subunit c, chloroplastic OS=Zea mays ...	[more]
ATPH_LOLPR	6.190e-25	79.01	ATP synthase subunit c, chloroplastic OS=Lolium pe...	[more]
ATPH_HORVU	6.190e-25	79.01	ATP synthase subunit c, chloroplastic OS=Hordeum v...	[more]
ATPH_CRYJA	6.190e-25	79.01	ATP synthase subunit c, chloroplastic OS=Cryptomer...	[more]
ATPH_CHAVU	6.190e-25	79.01	ATP synthase subunit c, chloroplastic OS=Chara vul...	[more]
ATPH_CERDE	6.190e-25	79.01	ATP synthase subunit c, chloroplastic OS=Ceratophy...	[more]
ATPH_BRADI	6.190e-25	79.01	ATP synthase subunit c, chloroplastic OS=Brachypod...	[more]

Pages

Properties


Property Name	Value
Genbank description	C01001G08Rv Veg1 Citrus clementina cDNA clone C01001G08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX286853 ID=CX286853; Name=CX286853; organism=Citrus clementina; type=EST; length=621bp
TTTTTCTTTATTTTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTG
CCGCTTCCGTTATTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGA
CCTGGAGTTGGTCAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGC
GAGACAGCCCGAGGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTC
TGGCTTTTATGGAAGCTTTAACAATTTATGGGCTGGTTGTAGCATTAGCA
CTTTTATTTGCGAATCCTTTTGTTTAATCCTAGAAATAGGAAGGGCAATT
TACAATTTACTTATTTTTTTTTCTCTTATTTATTATATCTGTGTTTCTGG
CTTTTTTGAATTCTATCAAGATTTAACTCCTCCAATTGGAAGGACTGATT
TGAGGATGGGGAATTAGGATAGGCATACCAGTTCGCCTTTTTCTTTCCCT
TTCTTAGTCTAAAGGAAACCCTCTTTTTAAGTGATGCTGCAACAAACGAG
GGGTTTTGCAATTGACAGGAGTCCCGGCCCCTAATACTAATAAGTATCCC
TCTTATCGGGAATCCCCAATTGCCAATTCAAAGAAAGGATTTCGAAATCG
AATTTTTGACCCTGTTTCGAA