CX286853

Overview
NameCX286853
Unique NameCX286853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_AGRST (ATP synthase subunit c, chloroplastic OS=Agrostis stolonifera GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_GOSBA (ATP synthase subunit c, chloroplastic OS=Gossypium barbadense GN=atpH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.084e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEAL+IYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALSIYGLVVALALLFANPFV 81          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_IPOPU (ATP synthase subunit c, chloroplastic OS=Ipomoea purpurea GN=atpH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.056e-24
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            M+PLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MDPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_CYCTA (ATP synthase subunit c, chloroplastic OS=Cycas taitungensis GN=atpH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.056e-24
Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLI AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIPAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_ANGEV (ATP synthase subunit c, chloroplastic OS=Angiopteris evecta GN=atpH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.379e-24
Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALAL FANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALSFANPFV 81          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_HUPLU (ATP synthase subunit c, chloroplastic OS=Huperzia lucidula GN=atpH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.801e-24
Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALAL FANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALPFANPFV 81          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_CUSOB (ATP synthase subunit C, plastid OS=Cuscuta obtusiflora GN=atpE PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.801e-24
Identity = 62/81 (76.54%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNP+ISAASVIAAG AVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF+
Sbjct:    1 MNPIISAASVIAAGFAVGLASIGPGIGQGTAAGRAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFI 81          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_CUSGR (ATP synthase subunit C, plastid OS=Cuscuta gronovii GN=atpE PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.801e-24
Identity = 62/81 (76.54%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNP+ISAASVIAAG AVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF+
Sbjct:    1 MNPIISAASVIAAGFAVGLASIGPGIGQGTAAGRAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFI 81          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_CHLAT (ATP synthase subunit c, chloroplastic OS=Chlorokybus atmophyticus GN=atpH PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.801e-24
Identity = 63/81 (77.78%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            M+PLISAASV+AAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MSPLISAASVLAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX286853 vs. ExPASy Swiss-Prot
Match: ATPH_ATRBE (ATP synthase subunit c, chloroplastic OS=Atropa belladonna GN=atpH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.801e-24
Identity = 63/81 (77.78%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   32 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 274
            MNPL+ AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
The following BLAST results are available for this feature:
BLAST of CX286853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_AGRST6.190e-2579.01ATP synthase subunit c, chloroplastic OS=Agrostis ... [more]
ATPH_GOSBA8.084e-2579.01ATP synthase subunit c, chloroplastic OS=Gossypium... [more]
ATPH_IPOPU1.056e-2479.01ATP synthase subunit c, chloroplastic OS=Ipomoea p... [more]
ATPH_CYCTA1.056e-2479.01ATP synthase subunit c, chloroplastic OS=Cycas tai... [more]
ATPH_ANGEV1.379e-2479.01ATP synthase subunit c, chloroplastic OS=Angiopter... [more]
ATPH_HUPLU1.801e-2479.01ATP synthase subunit c, chloroplastic OS=Huperzia ... [more]
ATPH_CUSOB1.801e-2476.54ATP synthase subunit C, plastid OS=Cuscuta obtusif... [more]
ATPH_CUSGR1.801e-2476.54ATP synthase subunit C, plastid OS=Cuscuta gronovi... [more]
ATPH_CHLAT1.801e-2477.78ATP synthase subunit c, chloroplastic OS=Chlorokyb... [more]
ATPH_ATRBE1.801e-2477.78ATP synthase subunit c, chloroplastic OS=Atropa be... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01001G08Rv Veg1 Citrus clementina cDNA clone C01001G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286853 ID=CX286853; Name=CX286853; organism=Citrus clementina; type=EST; length=621bp
TTTTTCTTTATTTTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTG
CCGCTTCCGTTATTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGA
CCTGGAGTTGGTCAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGC
GAGACAGCCCGAGGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTC
TGGCTTTTATGGAAGCTTTAACAATTTATGGGCTGGTTGTAGCATTAGCA
CTTTTATTTGCGAATCCTTTTGTTTAATCCTAGAAATAGGAAGGGCAATT
TACAATTTACTTATTTTTTTTTCTCTTATTTATTATATCTGTGTTTCTGG
CTTTTTTGAATTCTATCAAGATTTAACTCCTCCAATTGGAAGGACTGATT
TGAGGATGGGGAATTAGGATAGGCATACCAGTTCGCCTTTTTCTTTCCCT
TTCTTAGTCTAAAGGAAACCCTCTTTTTAAGTGATGCTGCAACAAACGAG
GGGTTTTGCAATTGACAGGAGTCCCGGCCCCTAATACTAATAAGTATCCC
TCTTATCGGGAATCCCCAATTGCCAATTCAAAGAAAGGATTTCGAAATCG
AATTTTTGACCCTGTTTCGAA
back to top