CX286884

Overview
NameCX286884
Unique NameCX286884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length462
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: ALAT2_DANRE (Alanine aminotransferase 2-like OS=Danio rerio GN=gpt2l PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 3.762e-39
Identity = 78/152 (51.32%), Postives = 105/152 (69.08%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGPPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI 458
            V++ +PQYPLYSA+I+ LG   + YYL E   W LD+++LQ+S+  AR K    R + IINPGNPTGQ  S   + ++++F  +ENL L+ DEVYQ N+Y     F S KKVL +MGP +SK+V+L SFH+ SK Y GECG RGGY E+ N+
Sbjct:  235 VMISIPQYPLYSASIAELGAVQINYYLNEEKCWSLDISELQRSLQAAR-KHCNPRVLCIINPGNPTGQVQSRQCIEDVIQFAAKENLFLMADEVYQDNVYAKGCEFHSFKKVLFEMGPEYSKKVELASFHSTSKCYMGECGFRGGYMEVINM 385          
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: ALAT_SCHPO (Putative alanine aminotransferase OS=Schizosaccharomyces pombe GN=SPBC582.08 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.210e-37
Identity = 77/157 (49.04%), Postives = 106/157 (67.52%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGPP----FSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP 461
            V+VP PQYPLY A I L+ GS+V Y L E  NW +D +  ++S  +A  KGI VR  V+INPGNPTG C+SE ++ ++LRF   + +VLL DEVYQ NIYQ++  F S ++ L ++          +V L+S ++VSKG +GECGQRGGY ++ NIP
Sbjct:  191 VMVPAPQYPLYGAQIDLMSGSMVSYSLSEENNWDIDFDQFKKSFDEASKKGINVRLCVVINPGNPTGACISENSMEKVLRFAKAKGIVLLADEVYQNNIYQNK--FHSFRRKLGELREKEPDNHWDQVSLISVNSVSKGQFGECGQRGGYLDVVNIP 345          
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: ALAT2_MOUSE (Alanine aminotransferase 2 OS=Mus musculus GN=Gpt2 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.065e-37
Identity = 74/152 (48.68%), Postives = 102/152 (67.11%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGPPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI 458
            V++P+PQYPLYSA IS L    V YYL+E   W L++++L++++ QA+      + + IINPGNPTGQ  S   + +++ F ++E L LL DEVYQ N+Y  +  F S KKVL  MG  +S  V+L SFH+ SKGY GECG RGGY E+ N+
Sbjct:  208 VMIPIPQYPLYSAVISELDAVQVNYYLDEENCWALNVDELRRALRQAKDH-CDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYQMGHEYSSNVELASFHSTSKGYMGECGYRGGYMEVINL 358          
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: ALAT_YEAST (Probable alanine aminotransferase OS=Saccharomyces cerevisiae GN=ALT2 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.411e-32
Identity = 66/152 (43.42%), Postives = 97/152 (63.82%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKV---LMDMGPPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 449
            +L+P+PQYPLY+A+ SL    ++PYYL+E +NW  + +++++ V  A  K I    +++INPGNPTG  LSE  +  I     +  + ++ DEVYQ+NI+ D + F S KKV   L  + P     VQL S H++SKG+  ECGQRGGY E+
Sbjct:  192 LLIPIPQYPLYTASASLFNAQVLPYYLDEESNWSTNSDEIEKVVQDALKKQIRPSVLIVINPGNPTGAVLSEETIARICLIAAKYGITIISDEVYQENIFNDVK-FHSMKKVLRKLQHLYPGKFDNVQLASLHSISKGFMDECGQRGGYMEI 342          
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: ALAM_YEAST (Probable alanine aminotransferase, mitochondrial OS=Saccharomyces cerevisiae GN=ALT1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.872e-30
Identity = 66/153 (43.14%), Postives = 94/153 (61.44%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDM---GPPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 452
            VL+P+PQYPLY+AT++L     +PYYL+E + W  +  +++  V +A    I    +V+INPGNPTG  LS  ++ +I     +   V++ DEVYQ+NI+   + F S KK+L  +    P     VQL S H+ SKG  GECGQRGGY E+T
Sbjct:  277 VLIPIPQYPLYTATLALNNSQALPYYLDENSGWSTNPEEIETVVKEAIQNEIKPTVLVVINPGNPTGAVLSPESIAQIFEVAAKYGTVVIADEVYQENIFPGTK-FHSMKKILRHLQREHPGKFDNVQLASLHSTSKGVSGECGQRGGYMELT 428          
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: YFBQ_SHIFL (Uncharacterized aminotransferase yfbQ OS=Shigella flexneri GN=yfbQ PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.018e-17
Identity = 47/136 (34.56%), Postives = 76/136 (55.88%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGPPFSKEVQLVSFHTVSKGY 410
            +LVP P YPL++A +SL  G  V Y  +E+++W  DL+D++  +   R++GI     VIINP NPTG   S+  L EI+    Q NL++  DE+Y + +Y D      +         P + ++  ++F+ +SK Y
Sbjct:  122 MLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDDIRAKITP-RTRGI-----VIINPNNPTGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDAEHHSIA---------PLAPDLLTITFNGLSKTY 242          
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: YFBQ_ECOLI (Uncharacterized aminotransferase yfbQ OS=Escherichia coli (strain K12) GN=yfbQ PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.018e-17
Identity = 47/136 (34.56%), Postives = 76/136 (55.88%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGPPFSKEVQLVSFHTVSKGY 410
            +LVP P YPL++A +SL  G  V Y  +E+++W  DL+D++  +   R++GI     VIINP NPTG   S+  L EI+    Q NL++  DE+Y + +Y D      +         P + ++  ++F+ +SK Y
Sbjct:  122 MLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDDIRAKITP-RTRGI-----VIINPNNPTGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDAEHHSIA---------PLAPDLLTITFNGLSKTY 242          
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: YFBQ_ECOL6 (Uncharacterized aminotransferase yfbQ OS=Escherichia coli O6 GN=yfbQ PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.018e-17
Identity = 47/136 (34.56%), Postives = 76/136 (55.88%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGPPFSKEVQLVSFHTVSKGY 410
            +LVP P YPL++A +SL  G  V Y  +E+++W  DL+D++  +   R++GI     VIINP NPTG   S+  L EI+    Q NL++  DE+Y + +Y D      +         P + ++  ++F+ +SK Y
Sbjct:  122 MLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDDIRAKITP-RTRGI-----VIINPNNPTGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDAEHHSIA---------PLAPDLLTITFNGLSKTY 242          
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: Y286_HAEIN (Uncharacterized aminotransferase HI0286 OS=Haemophilus influenzae GN=HI0286 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.009e-16
Identity = 43/100 (43.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIY 302
            VLVP+P YPL++A ++L GG  V Y  +E ANW   ++D++  V  A++K     A+VIINP NPTG   S+  L+EI+    Q NL++  DE+Y + +Y
Sbjct:  122 VLVPMPDYPLWTAAVTLSGGKAVHYLCDEDANWFPTIDDIKAKV-NAKTK-----AIVIINPNNPTGAVYSKELLQEIVEIARQNNLIIFADEIYDKILY 215          
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: AAT_MYCTU (Probable aspartate aminotransferase OS=Mycobacterium tuberculosis GN=aspC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.427e-16
Identity = 50/150 (33.33%), Postives = 80/150 (53.33%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGPPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 452
            VL+P P YPL++A+ SL GG+ V Y  +ET  W  D+ DL+  + +        +A+V+INP NPTG   S   L +++    +  L+LL DE+Y + +Y D +  +S   +  DM          ++F+ +SK Y    G R G+  +T
Sbjct:  147 VLIPSPDYPLWTASTSLAGGTPVHYLCDETQGWQPDIADLESKITE------RTKALVVINPNNPTGAVYSCEILTQMVDLARKHQLLLLADEIYDKILYDDAK-HISLASIAPDM--------LCLTFNGLSKAY-RVAGYRAGWLAIT 280          
The following BLAST results are available for this feature:
BLAST of CX286884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ALAT2_DANRE3.762e-3951.32Alanine aminotransferase 2-like OS=Danio rerio GN=... [more]
ALAT_SCHPO1.210e-3749.04Putative alanine aminotransferase OS=Schizosacchar... [more]
ALAT2_MOUSE2.065e-3748.68Alanine aminotransferase 2 OS=Mus musculus GN=Gpt2... [more]
ALAT_YEAST3.411e-3243.42Probable alanine aminotransferase OS=Saccharomyces... [more]
ALAM_YEAST1.872e-3043.14Probable alanine aminotransferase, mitochondrial O... [more]
YFBQ_SHIFL9.018e-1734.56Uncharacterized aminotransferase yfbQ OS=Shigella ... [more]
YFBQ_ECOLI9.018e-1734.56Uncharacterized aminotransferase yfbQ OS=Escherich... [more]
YFBQ_ECOL69.018e-1734.56Uncharacterized aminotransferase yfbQ OS=Escherich... [more]
Y286_HAEIN2.009e-1643.00Uncharacterized aminotransferase HI0286 OS=Haemoph... [more]
AAT_MYCTU3.427e-1633.33Probable aspartate aminotransferase OS=Mycobacteri... [more]

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Properties
Property NameValue
Genbank descriptionC01002B09Rv Veg1 Citrus clementina cDNA clone C01002B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286884 ID=CX286884; Name=CX286884; organism=Citrus clementina; type=EST; length=462bp
GGGTTTTGGTTCCAGTTCCACAGTACCCACTGTACTCAGCTACCATATCT
CTTTTAGGTGGTTCTCTTGTTCCATACTACTTGGAAGAGACAGCAAATTG
GGGTCTTGATCTTAATGACCTTCAGCAGTCAGTTGCACAGGCTCGTTCTA
AAGGAATTACGGTTAGAGCAATGGTGATTATTAATCCTGGCAACCCAACC
GGTCAGTGTCTTAGTGAAGCTAATCTAAGAGAAATATTGCGATTTTGTTA
TCAAGAGAACTTAGTGTTACTTGGAGACGAGGTTTATCAGCAGAACATTT
ACCAGGATGAGCGCCCCTTTGTTAGTTCTAAAAAGGTTTTGATGGATATG
GGGCCGCCCTTCAGCAAGGAGGTTCAGCTTGTTTCTTTCCACACTGTCTC
GAAAGGATATTGGGGTGAATGTGGACAACGTGGTGGATATTTTGAGATGA
CTAATATTCCCC
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