CX286896
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.861e-17 Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 1 Query: 4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372 LGGR AEE+IFG+ VTTGA D Q++ +ARQMV FG S IG ++ + +M ++ S A+ +D+ V++L ++AY A I + + + KL ++L+EKET+ G+EF ++ Sbjct: 544 LGGRAAEEIIFGDSEVTTGAVGDLQQITGLARQMVTTFGMS-DIGPWSLMDSSAQSDVIMRMMARNSMSEKLAEDIDSAVKKLSDSAYEIALSHIKNNREAMDKLVEVLLEKETIGGDEFRAI 665
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.909e-16 Identity = 47/123 (38.21%), Postives = 74/123 (60.16%), Query Frame = 1 Query: 4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372 LGGR AEEVIFGE VTTGA +D Q++ +A+QMV FG S +IG ++ + +M ++ S A+ +D V+ L + AY A I + + + K+ ++L+EKET+ G+EF ++ Sbjct: 537 LGGRAAEEVIFGESEVTTGAVSDLQQITGLAKQMVTTFGMS-EIGPWSLMDSSEQSDVIMRMMARNSMSEKLANDIDTAVKTLSDKAYEIALSQIRNNREAMDKIVEILLEKETMSGDEFRAI 658
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 4.962e-16 Identity = 48/126 (38.10%), Postives = 77/126 (61.11%), Query Frame = 1 Query: 4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAI---GGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372 LGGR AEE+IFGE VTTGA+ D Q++ +A+QMV FG S IG ++ G G+ + +M ++ S A+ +D V+ L + AY A I ++ + + K+ ++L+EKET+ G+EF ++ Sbjct: 531 LGGRAAEEIIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMS-DIGPWSLMDSGAQSGDVIM--RMMARNSMSEKLAEDIDTAVKRLSDEAYEIALSQIRSNREAMDKIVEVLLEKETLSGDEFRAI 653
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 6.481e-16 Identity = 48/123 (39.02%), Postives = 78/123 (63.41%), Query Frame = 1 Query: 4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372 LGGRVAE++ FG+ +TTGA +D +V++ A + +FG S+K+GQV+ P G+ M +K YS ATA ++D EVR LV +AY R +++T + + K+ + L+EKE ++ + + L Sbjct: 621 LGGRVAEQLFFGQ--ITTGAQDDLRKVTQSAYAQIVQFGMSEKLGQVSFDFPRQ----GETMV-EKPYSEATAQLIDEEVRCLVRSAYNRTLELLTQCREQVEKVGRRLLEKEVLEKADMIEL 736
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 8.464e-16 Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 1 Query: 4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372 LGGRV+EE+ FG +TTGA +D +V++ A + +FG ++K+GQ++ P M +K YS ATA ++D EVR L+ AY R ++T + K+A LL+EKE +D + + L Sbjct: 628 LGGRVSEEIFFGR--ITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQG-----DMVLEKPYSEATARMIDDEVRILISDAYRRTVALLTEKKADVEKVALLLLEKEVLDKNDMVQL 743
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 8.464e-16 Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 1 Query: 4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372 LGGRV+EE+ FG +TTGA +D +V++ A + +FG ++K+GQ++ P M +K YS ATA ++D EVR L+ AY R ++T + K+A LL+EKE +D + + L Sbjct: 629 LGGRVSEEIFFGR--ITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQG-----DMVLEKPYSEATARLIDDEVRILINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVEL 744
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 8.464e-16 Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 1 Query: 4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372 LGGRV+EE+ FG +TTGA +D +V++ A + +FG ++K+GQ++ P M +K YS ATA ++D EVR L+ AY R ++T + K+A LL+EKE +D + + L Sbjct: 630 LGGRVSEEIFFGR--ITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQG-----DMVLEKPYSEATARLIDDEVRILINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVEL 745
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: YME1_CAEEL (Protein YME1 homolog OS=Caenorhabditis elegans GN=ymel-1 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.886e-15 Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 1 Query: 4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQ----KDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEE 360 +GGRVAEE+IFG++ VTTGA++D + +++A QMV+ FG S K+G F Q S D + TA+++DAE+ +++ +Y RAK I+ T LA+ L+E ET+ +E Sbjct: 518 MGGRVAEELIFGDDKVTTGAADDLSKATQLAVQMVKVFGMSDKVGL--------RDFTAQDNESALVKVSDLAPQTAELIDAEINRVLQESYKRAKVILETKKKEHQLLAEALLEYETLSADE 632
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH9_ORYSJ (Cell division protease ftsH homolog 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH9 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 2.463e-15 Identity = 47/119 (39.50%), Postives = 67/119 (56.30%), Query Frame = 1 Query: 4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEE 360 +GGRVAEE+IFGE+NVTTGA ND + +A+ MV G S IG V + ++ S+ +DAEV +L+ AY R K+++ H LH LA L+E+ET+ +E Sbjct: 657 MGGRVAEELIFGEDNVTTGARNDLHTATELAQYMVSNCGMSDAIGPVHV---------------KERPSVEMQSRIDAEVVKLLREAYGRVKRLLKKHEKQLHALANALLERETLTADE 760
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 3.216e-15 Identity = 44/123 (35.77%), Postives = 72/123 (58.54%), Query Frame = 1 Query: 4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372 LGGR AEEV+ G+ ++TGA ND +V+++ V +GFS+K+G ++ P K YS TA ++D EVRE V AY + ++I H D + ++A+LL+EKE + ++ + + Sbjct: 641 LGGRAAEEVLIGK--ISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSF------PQREDGFEMSKPYSSQTASIIDTEVREWVAKAYEKTVELIKQHKDQVAQIAELLLEKEVLHQDDLVQV 755 The following BLAST results are available for this feature:
BLAST of CX286896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >CX286896 ID=CX286896; Name=CX286896; organism=Citrus clementina; type=EST; length=475bpback to top |