CX286969

Overview
NameCX286969
Unique NameCX286969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286969 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.171e-11
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = -3
Query:  369 KRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG 599
            ++L   GM+++   +  + +  +ED +V  T E+ PG++V G+ VAE+ G PRMGPTFGAM++SG+KAA L  + LG
Sbjct:  182 RKLAERGMVEASK-LGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 257          
BLAST of CX286969 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = -3
Query:  369 GMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG 581
            G+I+ +PG  A+     E   V  T+E+ PG+ VTGM    + GAPRMGP FG M +SG+KAA   L+ LG
Sbjct:  181 GLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251          
BLAST of CX286969 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = -3
Query:  372 GMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 581
            G++  +PG  A+     E   V+ TRE+ PG+ VTGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct:  181 GLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of CX286969 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = -3
Query:  366 PGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQ 563
            PG  ++ ++ +ED +V  T  + PG++ TGM VA ++G PRMGPTFGAM++SG++ A   L  LG+
Sbjct:  227 PGHDSMWVSRSEDQVVEHTGVVHPGVVATGMAVATVEGLPRMGPTFGAMLLSGKRGAQACLNELGR 292          
BLAST of CX286969 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.250e-11
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = -3
Query:  372 GMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 581
            G+I+ +PG  A+     E   V  TRE+ PG+ VTGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct:  181 GLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
The following BLAST results are available for this feature:
BLAST of CX286969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
THI4_AERPE2.171e-1144.16Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_PYRFU2.836e-1146.48Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRHO3.703e-1148.57Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_HALWD3.703e-1145.45Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_PYRAB8.250e-1148.57Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]

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Properties
Property NameValue
Genbank descriptionC01003B04SK Veg1 Citrus clementina cDNA clone C01003B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286969 ID=CX286969; Name=CX286969; organism=Citrus clementina; type=EST; length=604bp
TCGGCACGAGGGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTATGTAAAC
ATTTGCTTTTATTTTTTATTTTCTATTTCAACATAAAAGCAGCATTGCCG
TGCTTTTTTTTTTAGCTGTTGAATTCATTAATTTGGAACTCAACAAAAAT
CGAAGAAAAATTACACCAAATTTAGTGGCCGATCGTAGTTACAATTTTTA
TTTTTTTTGGGTTTATTGTTGATTTTGAATTCTCATCAAAATGTACATAA
TTCTCAGATTTTATAATTTTTAAGCATCAACAATCTCGCTGTTCTCAGTG
GCAGCAAGGATAAACTCTGGCTGTACTTCCGTAACTTCACTGAATGTCCC
ATCTATCGCATTCGGCTGCCCCAATGCCTTCAACGCCAAGTGGGCTGCCT
TCTGCCCTGAAATCATCATGGCCCCGAATGTAGGTCCCATTCTAGGGGCA
CCGTCGATCTCTGCGACTTCCATGCCCGTGACAATCATGCCAGGCACGAT
CTCCCTGGTAAGCCTAACGATAGCATCCTCTGCAGTGTTCATATCGAGAG
CTTTCATTCCGGGGACGGAGTCAATCATGCCAATACTCTTAAGCCTCTTA
ACAC
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