CX286980

Overview
NameCX286980
Unique NameCX286980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.853e-77
Identity = 141/180 (78.33%), Postives = 158/180 (87.78%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTAN 623
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKT+KLQIWDTAGQERFRTITSSYYRGAHGI +VYDVT+M+SFNNVKQWL EIDRYA + V KLLVGNK D+ + KVV+   AK FAD LGIPFLETSAK+A NVEQAFLTMA +IK++MG+    N
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSSIATN 180          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.853e-77
Identity = 143/174 (82.18%), Postives = 156/174 (89.66%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMG 605
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQER RTITSSYYRGAHGII+VYDVT+ ES+ NVKQWL EIDRYA+++V KLLVGNK DL   KVVD  TAK FAD LGIPFLETSAK+A NVEQAF+TMA EIKK+MG
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 174          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 9.197e-77
Identity = 141/179 (78.77%), Postives = 157/179 (87.71%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTA 620
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT+ ESFNNVKQWL+EIDRYA ++V KLLVGNK DL   +VV T  AK FA+ LGI FLETSAK+A NVE+AF+ MA +IKK+M N P A
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVA 179          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 286.189 bits (731), Expect = 9.197e-77
Identity = 141/181 (77.90%), Postives = 156/181 (86.19%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN-QPTAN 623
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ LDGK IKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT+  SFNNVKQW+ EI RYA DSV +LLVGNKCDL+E K+VDT TA+ +AD +GIPFLETSAK + NVEQAF+ MA EIKK  G  QP  N
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKKLQGGIQPNNN 181          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 2.676e-76
Identity = 140/180 (77.78%), Postives = 158/180 (87.78%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTAN 623
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT EL+GKT+KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT+ +SFNNVKQWL EIDRYA + V +LLVGNK D+V+ KVV+   AK FAD L IPFLETSAKD+ NVEQAFLTM+ +IK++MGN   A+
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFAS 180          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 275.789 bits (704), Expect = 1.243e-73
Identity = 137/174 (78.74%), Postives = 152/174 (87.36%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMG 605
            M+  YD LFKLLLIGDS VGKSCLLLRFADD Y +SYISTIGVDFKI+T+ELDGKTIKLQIWDTAGQERF TITSSYYRGAHG ++VYDVT+ ES+ NVKQWL EIDR+A+++V KLLVGNK DL   KVVD  TAK FAD LGIPFLETSAK+A NVEQAF+TMA EIKK+MG
Sbjct:    1 MNPGYDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMG 174          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 2.344e-72
Identity = 137/179 (76.54%), Postives = 156/179 (87.15%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM-GNQPT 617
            M+ +Y YLFKLLLIGDS VGKSCLLLRFADD+Y +S+ISTIGVDFKIRT+EL+GKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT+  +F NV+QWL EIDR+A ++V KLLVGNK DLV  KVVD  TAKAFAD L IPFLETSAK + NVEQAF+TMA EIK ++  +QPT
Sbjct:    1 MNPDYHYLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRLTASQPT 179          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 6.821e-72
Identity = 132/176 (75.00%), Postives = 150/176 (85.23%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQ 611
            M++EYDYLFKLLLIG+S VGKSCLLLRF+DD+Y + YISTIGVDFKI+TVELDGKT+KLQIWDTAGQERFRTITSSYYRG+HGIIIVYDVT+ ESFN VK WL EIDRYA  +V KLLVGNKCDL + +VV+   AK FAD   +PFLETSA D+ NVE AFLTMA +IK+ M  Q
Sbjct:    1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ 176          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.572e-68
Identity = 124/175 (70.86%), Postives = 151/175 (86.29%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN 608
            M+ E+D+ FK+LLIGDS VGKSCLLLRFADDS+ D++ISTIGVDFKI+T+ LDGKTIKLQIWDTAGQERFRTITSSYYRGA GII+VYD T+ +SF NVKQW+ EIDRYA ++V KLLVGNK DLV  KVVD+  AK+FA+  GIPF+ETSAK+A NVE+ F++MA +IK ++ +
Sbjct:    3 MAPEHDFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLAD 177          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 5.593e-66
Identity = 117/181 (64.64%), Postives = 152/181 (83.98%), Query Frame = 3
Query:   72 PSKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQP 614
            P+   S  YDYL KLLLIGDS VGKSCLLLRF++DS+  S+I+TIG+DFKIRT+EL+GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVT+ +SF N++ W+  I+++A DSV K+L+GNKCD+ E KVVD+   K+ ADE GI FLETSAK++INVE+AF+++A +IKK+M + P
Sbjct:    4 PATNKSAAYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTP 184          
The following BLAST results are available for this feature:
BLAST of CX286980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT1_NEUCR1.853e-7778.33GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
RAB1B_PIG1.853e-7782.18Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
YPT1_PHYIN9.197e-7778.77Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB1B_DICDI9.197e-7777.90Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
YPT1_SCHPO2.676e-7677.78GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RAB1C_HUMAN1.243e-7378.74Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB1A_DICDI2.344e-7276.54Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
YPT1_YEAST6.821e-7275.00GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB1D_DICDI1.572e-6870.86Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB8A_DICDI5.593e-6664.64Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionC01003C03SK Veg1 Citrus clementina cDNA clone C01003C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286980 ID=CX286980; Name=CX286980; organism=Citrus clementina; type=EST; length=625bp
CCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAGGGCAAACGGA
CCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCAACGAATACGA
CTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTCGGGAAGTCCT
GCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAGCTACATCAGT
ACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGGATGGGAAGAC
GATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGATTCAGGACTA
TAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAATTGTCTATGAC
GTAACTGAGATGGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAGAT
TGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTTGGGAACAAAT
GCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGCCAAGGCATTT
GCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCAAAGATGCAAT
CAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATTAAGAAAAAAA
TGGGCAACCAGCCTACTGCAAACAA
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