CX286980

Overview
NameCX286980
Unique NameCX286980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.003e-52
Identity = 96/169 (56.80%), Postives = 133/169 (78.70%), Query Frame = 3
Query:   96 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 602
            YD + K+LLIGDS VGKSCLL+RF +D +  S+I+TIG+DFKI+TV+++GK +KLQ+WDTAGQERFRTIT++YYRGA GII+VYDVT+  +F N+KQW   ++ +AND    LLVGNK D+ + +VV  +  +A A ELG+PF+E+SAK+  NV + F T+A  I++K+
Sbjct:   17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVGNKSDM-DTRVVTYEQGEALAKELGLPFIESSAKNDDNVNEIFFTLARLIQEKI 184          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.003e-52
Identity = 99/168 (58.93%), Postives = 129/168 (76.79%), Query Frame = 3
Query:   96 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 599
            YD LFKLLLIGDS VGK+C+L RF+DD++  ++ISTI +DFKI+TVEL GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T  +SF N+ +WL  ID++AN+ V ++L+ NKCD+   +VV     +  A E  I F ETSAK  IN+E+AFLT+  +I +K
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLLRNKCDMDHKRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTLPEDILRK 173          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.132e-50
Identity = 94/165 (56.97%), Postives = 130/165 (78.79%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTM 578
            MS EY++LFK +L GDS VGK+ +L R  DD++ +++I TIG++FKI+TV ++GK IKLQIWDTAG++RFR + +S+YRG HG+IIVYDVT+  SF NV  W+ +I RYAN++V K+++GNK DLV  KVVD   A+ FAD L IPF E SAK +IN+E+AF+++
Sbjct:    1 MSKEYEHLFKFVLAGDSGVGKTSILFRITDDTFTETHI-TIGIEFKIKTVYIEGKPIKLQIWDTAGEKRFR-VHNSHYRGCHGVIIVYDVTDQRSFENVPSWIEDIRRYANENVIKIIIGNKNDLVSQKVVDPFLAQEFADSLDIPFKEISAKQSINIEEAFISL 163          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.522e-50
Identity = 94/171 (54.97%), Postives = 123/171 (71.93%), Query Frame = 3
Query:   87 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 599
            S  YD + KLLL+GDS VGKSCLLLRF +D +  S+I+TIG+DFKIRT+E  GK IKLQ+WDTAGQERFRTIT++YYRGA GI+++YDVT+  SF NV+ W   + ++AN+     LVGNKCD   N+ V  +  +  A +L +PFLE SAK   NV+  F  +A  I++K
Sbjct:    8 SRAYDMIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELASIIQEK 178          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 9.584e-50
Identity = 94/184 (51.09%), Postives = 134/184 (72.83%), Query Frame = 3
Query:   54 SQDSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 602
            +QD+    K  S++ +DY+FKLL+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   +LVGNKCD+ + +V+ T+  +   ++LG  F ETSAKD INV+Q F  +   I  KM
Sbjct:   12 AQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKM 195          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 9.584e-50
Identity = 94/184 (51.09%), Postives = 134/184 (72.83%), Query Frame = 3
Query:   54 SQDSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 602
            +QD+    K  S++ +DY+FKLL+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   +LVGNKCD+ + +V+ T+  +   ++LG  F ETSAKD INV+Q F  +   I  KM
Sbjct:   12 AQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKM 195          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 9.584e-50
Identity = 94/182 (51.65%), Postives = 132/182 (72.53%), Query Frame = 3
Query:   60 DSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 602
            DS    K  S++ +DY+FK+L+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++T+  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   LLVGNKCD+ + +VV ++  +  AD LG  F E SAKD INV+Q F  +   I +KM
Sbjct:    6 DSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKM 187          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 9.584e-50
Identity = 94/182 (51.65%), Postives = 132/182 (72.53%), Query Frame = 3
Query:   60 DSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 602
            DS    K  S++ +DY+FK+L+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++T+  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   LLVGNKCD+ + +VV ++  +  AD LG  F E SAKD INV+Q F  +   I +KM
Sbjct:    6 DSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKM 187          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 9.584e-50
Identity = 94/182 (51.65%), Postives = 132/182 (72.53%), Query Frame = 3
Query:   60 DSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 602
            DS    K  S++ +DY+FK+L+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++T+  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   LLVGNKCD+ + +VV ++  +  AD LG  F E SAKD INV+Q F  +   I +KM
Sbjct:    6 DSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKM 187          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 9.584e-50
Identity = 94/182 (51.65%), Postives = 132/182 (72.53%), Query Frame = 3
Query:   60 DSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 602
            DS    K  S++ +DY+FK+L+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++T+  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   LLVGNKCD+ + +VV ++  +  AD LG  F E SAKD INV+Q F  +   I +KM
Sbjct:    6 DSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKM 187          
The following BLAST results are available for this feature:
BLAST of CX286980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SEC4_CANGA6.003e-5256.80Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]
RAB10_RAT6.003e-5258.93Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
RABF1_DICDI1.132e-5056.97Ras-related protein RabF1 OS=Dictyostelium discoid... [more]
SEC4_CANAL2.522e-5054.97Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RAB3C_HUMAN9.584e-5051.09Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
RAB3C_BOVIN9.584e-5051.09Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]
RAB3A_RAT9.584e-5051.65Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG9.584e-5051.65Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]
RAB3A_MOUSE9.584e-5051.65Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_MACFA9.584e-5051.65Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01003C03SK Veg1 Citrus clementina cDNA clone C01003C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286980 ID=CX286980; Name=CX286980; organism=Citrus clementina; type=EST; length=625bp
CCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAGGGCAAACGGA
CCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCAACGAATACGA
CTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTCGGGAAGTCCT
GCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAGCTACATCAGT
ACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGGATGGGAAGAC
GATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGATTCAGGACTA
TAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAATTGTCTATGAC
GTAACTGAGATGGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAGAT
TGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTTGGGAACAAAT
GCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGCCAAGGCATTT
GCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCAAAGATGCAAT
CAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATTAAGAAAAAAA
TGGGCAACCAGCCTACTGCAAACAA
back to top