CX286980

Overview
NameCX286980
Unique NameCX286980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 9.584e-50
Identity = 94/182 (51.65%), Postives = 132/182 (72.53%), Query Frame = 3
Query:   60 DSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 602
            DS    K  S++ +DY+FK+L+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++T+  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   LLVGNKCD+ + +VV ++  +  AD LG  F E SAKD INV+Q F  +   I +KM
Sbjct:    6 DSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKM 187          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.252e-49
Identity = 94/184 (51.09%), Postives = 133/184 (72.28%), Query Frame = 3
Query:   54 SQDSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 602
            +QD+    K  S++ +DY+FKLL+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   +L GNKCD+ + +VV T+  +   ++LG  F ETSAKD INV+Q F  +   I  KM
Sbjct:   12 AQDARFGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKM 195          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.252e-49
Identity = 94/184 (51.09%), Postives = 133/184 (72.28%), Query Frame = 3
Query:   54 SQDSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 602
            +QD+    K  S++ +DY+FKLL+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   +L GNKCD+ + +VV T+  +   ++LG  F ETSAKD INV+Q F  +   I  KM
Sbjct:   12 AQDARFGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKM 195          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3)

HSP 1 Score: 196.052 bits (497), Expect = 1.252e-49
Identity = 90/169 (53.25%), Postives = 126/169 (74.56%), Query Frame = 3
Query:   96 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 602
            +DY+FK+L+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++T+  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   LLVGNKCD+ + +VV ++  +  AD LG  F E SAKD INV+Q F  +   I +KM
Sbjct:   19 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKM 187          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RABG1_DICDI (Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.642e-49
Identity = 93/174 (53.45%), Postives = 132/174 (75.86%), Query Frame = 3
Query:  105 LFKLLLIGDSSVGKSCLLLRFAD-DSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM--GNQPT 617
            +FK+LLIGDS+VGK+ LLLRF D +++ ++ ++   VD+K + + +DG+T  LQIWDTAGQERFRTITSS+YRGAHG+++ YDVT+  ++NNV  W+ EI RY    V ++LVGNKCDL + K+V+   A+ +AD LGIPF+ETSA   +NVE+AF+ MA EI +    G++P+
Sbjct:    6 VFKILLIGDSAVGKTSLLLRFTDPNNFQETSVNMTSVDYKNKNITIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVGLWMQEIQRYGVLGVSRVLVGNKCDLEDRKLVNASIAQEYADILGIPFIETSATTGVNVEEAFMAMADEIYRNHIGGSKPS 179          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.757e-49
Identity = 88/176 (50.00%), Postives = 129/176 (73.30%), Query Frame = 3
Query:   96 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTAN 623
            +DY+FKLL+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV    K +KLQIWDTAGQER+RTIT++YYRGA G I++YDVT  +SFN+V+ W+ +I  Y+ D+   +LVGNKCD+ + +V+  +  +  AD+LG+ F ETSAK+ +NV+  F  +   I  KM     A+
Sbjct:   18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSESLDAD 193          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.212e-49
Identity = 89/193 (46.11%), Postives = 139/193 (72.02%), Query Frame = 3
Query:   45 NGPSQDSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYV-DSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPT 617
            NGP Q S+ PS   + + YD  FK++L+GDS VGK+CLL+RF D +++  ++IST+G+DF+ + +++DG  +KLQIWDTAGQERFR++T +YYR AH ++++YD+T  +SF+N++ WL EI  YA   V  +L+GNK D  +++VV  +  +  A E G+PF+ETSA+  +NV+ AF  +A E+K++    P+
Sbjct:   47 NGPPQ-SIRPSLGSTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKELKQRSAKAPS 238          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.114e-49
Identity = 89/171 (52.05%), Postives = 126/171 (73.68%), Query Frame = 3
Query:   96 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN 608
            +DY+FKLL+IG+SSVGK+  L R+ADD++  +++ST+G+DFK++TV    K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   +LVGNKCD+ E +VV T+  +  A++LG  F E SAK+ I+V QAF  +   I  KM +
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 189          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.114e-49
Identity = 89/171 (52.05%), Postives = 126/171 (73.68%), Query Frame = 3
Query:   96 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN 608
            +DY+FKLL+IG+SSVGK+  L R+ADD++  +++ST+G+DFK++TV    K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   +LVGNKCD+ E +VV T+  +  A++LG  F E SAK+ I+V QAF  +   I  KM +
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 189          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.114e-49
Identity = 89/171 (52.05%), Postives = 126/171 (73.68%), Query Frame = 3
Query:   96 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN 608
            +DY+FKLL+IG+SSVGK+  L R+ADD++  +++ST+G+DFK++TV    K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   +LVGNKCD+ E +VV T+  +  A++LG  F E SAK+ I+V QAF  +   I  KM +
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 189          
The following BLAST results are available for this feature:
BLAST of CX286980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3A_HUMAN9.584e-5051.65Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
RAB3C_RAT1.252e-4951.09Ras-related protein Rab-3C OS=Rattus norvegicus GN... [more]
RAB3C_MOUSE1.252e-4951.09Ras-related protein Rab-3C OS=Mus musculus GN=Rab3... [more]
RAB3A_BOVIN1.252e-4953.25Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A ... [more]
RABG1_DICDI3.642e-4953.45Ras-related protein RabG1 OS=Dictyostelium discoid... [more]
RAB3_DROME4.757e-4950.00Ras-related protein Rab-3 OS=Drosophila melanogast... [more]
RAB26_MOUSE6.212e-4946.11Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RAB3B_MOUSE8.114e-4952.05Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU8.114e-4952.05Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB3B_BOVIN8.114e-4952.05Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B ... [more]

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Properties
Property NameValue
Genbank descriptionC01003C03SK Veg1 Citrus clementina cDNA clone C01003C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286980 ID=CX286980; Name=CX286980; organism=Citrus clementina; type=EST; length=625bp
CCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAGGGCAAACGGA
CCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCAACGAATACGA
CTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTCGGGAAGTCCT
GCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAGCTACATCAGT
ACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGGATGGGAAGAC
GATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGATTCAGGACTA
TAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAATTGTCTATGAC
GTAACTGAGATGGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAGAT
TGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTTGGGAACAAAT
GCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGCCAAGGCATTT
GCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCAAAGATGCAAT
CAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATTAAGAAAAAAA
TGGGCAACCAGCCTACTGCAAACAA
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