CX286980

Overview
NameCX286980
Unique NameCX286980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3B_RAT (Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.060e-48
Identity = 88/171 (51.46%), Postives = 126/171 (73.68%), Query Frame = 3
Query:   96 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN 608
            +DY+FKLL+IG+SSVGK+  L R+ADD++  +++ST+G+DFK++TV    K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   +LVGNKCD+ E +V+ T+  +  A++LG  F E SAK+ I+V QAF  +   I  KM +
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVIPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 189          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.060e-48
Identity = 89/171 (52.05%), Postives = 126/171 (73.68%), Query Frame = 3
Query:   96 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN 608
            +DY+FKLL+IG+SSVGK+  L R+ADD++  +++ST+G+DFK++TV    K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   +LVGNKCD+ E +VV T+  +  A++LG  F E SAK+ I+V QAF  +   I  KM +
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 189          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.384e-48
Identity = 87/192 (45.31%), Postives = 133/192 (69.27%), Query Frame = 3
Query:   45 NGPSQDSLLPSKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYV-DSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPT 617
            NGP Q          + YD  FK++L+GDS VGK+CLL+RF D +++  ++IST+G+DF+ + +++DG  +KLQIWDTAGQERFR++T +YYR AH ++++YD+T  +SF+N++ WL EI  YA   V  +L+GNK D  + +VV  +  +  A E G+PF+ETSAK  +NV+ AF  +A E+K++    P+
Sbjct:   44 NGPPQSGRPSLGGTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELKQRSTKAPS 235          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.808e-48
Identity = 91/183 (49.73%), Postives = 125/183 (68.31%), Query Frame = 3
Query:   54 SQDSLLPSKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 602
            S+    P       +DY+FKLLLIG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV    K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+   ESF  V+ W  +I  Y+ D+   +LVGNKCDL + +VV  +  +  AD+LG  F E SAK+ INV+Q F  +   I  KM
Sbjct:    5 SEPPASPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDIICDKM 187          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.808e-48
Identity = 90/177 (50.85%), Postives = 124/177 (70.06%), Query Frame = 3
Query:   72 PSKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 602
            P       +DY+FKLLLIG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV    K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+   ESF  V+ W  +I  Y+ D+   +LVGNKCDL + +VV  +  +  AD+LG  F E SAK+ INV+Q F  +   I +KM
Sbjct:   11 PRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.869e-48
Identity = 91/169 (53.85%), Postives = 122/169 (72.19%), Query Frame = 3
Query:   96 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 602
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R + +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T  E+FN++  WL +  ++AN ++  +L+GNKCDL   + V T+  + FA E G+ FLETSA+ A NVE+AF+  A EI KK+
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKI 171          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.869e-48
Identity = 91/169 (53.85%), Postives = 122/169 (72.19%), Query Frame = 3
Query:   96 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 602
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R + +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T  E+FN++  WL +  ++AN ++  +L+GNKCDL   + V T+  + FA E G+ FLETSA+ A NVE+AF+  A EI KK+
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKI 171          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.172e-47
Identity = 90/183 (49.18%), Postives = 124/183 (67.76%), Query Frame = 3
Query:   54 SQDSLLPSKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 602
            S+    P       +DY+FKLLLIG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV    K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+   ESF  V+ W  +I  Y+ D+   +LVGNKCDL + +VV  +  +  A +LG  F E SAK+ INV+Q F  +   I  KM
Sbjct:    5 SEPPASPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVFERLVDIICDKM 187          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.998e-47
Identity = 95/174 (54.60%), Postives = 126/174 (72.41%), Query Frame = 3
Query:   90 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQ 611
            +EYDYLFK +LIGDS VGKS LL+RF  + +     STIGV+F  R + LD K IK QIWDTAGQER+R ITS+YYRGA G +IVYD+T+  SF+NV +WL E+  +A+ ++  +LVGNK DL+  + V T+ A+AFA E  + F+ETSA DA NVE+AF T+  EI + + N+
Sbjct:    5 DEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNR 178          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.998e-47
Identity = 87/169 (51.48%), Postives = 123/169 (72.78%), Query Frame = 3
Query:   96 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 602
            +DY+FKLL+IG+SSVGK+  L R+ DDS+  +++ST+G+DFK++TV    K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN+V+ W  +I  Y+ ++   +LVGNKCD+   +VV     +  AD+LG+ F ETSAK+ INV+  F  +   I  KM
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICDKM 187          
The following BLAST results are available for this feature:
BLAST of CX286980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3B_RAT1.060e-4851.46Ras-related protein Rab-3B OS=Rattus norvegicus GN... [more]
RAB3B_HUMAN1.060e-4852.05Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
RAB26_RAT1.384e-4845.31Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
RAB3D_MOUSE1.808e-4849.73Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB3D_HUMAN1.808e-4850.85Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
YPTV4_VOLCA6.869e-4853.85GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE6.869e-4853.85GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB3D_RAT1.172e-4749.18GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
YPT3_SCHPO1.998e-4754.60GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAB3_CAEEL1.998e-4751.48Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionC01003C03SK Veg1 Citrus clementina cDNA clone C01003C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286980 ID=CX286980; Name=CX286980; organism=Citrus clementina; type=EST; length=625bp
CCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAGGGCAAACGGA
CCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCAACGAATACGA
CTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTCGGGAAGTCCT
GCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAGCTACATCAGT
ACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGGATGGGAAGAC
GATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGATTCAGGACTA
TAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAATTGTCTATGAC
GTAACTGAGATGGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAGAT
TGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTTGGGAACAAAT
GCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGCCAAGGCATTT
GCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCAAAGATGCAAT
CAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATTAAGAAAAAAA
TGGGCAACCAGCCTACTGCAAACAA
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