CX287024

Overview
NameCX287024
Unique NameCX287024
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287024 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.570e-19
Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 3
Query:   33 VPILSFL----LMASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 308
            VP+ S L    LM++     + F+GGL+W T D+SL +AF  +GD++++K+I DRETGRSRGFGFV F DE +   AI  M+G+ L+GR+I VN A
Sbjct:   21 VPVTSMLGSLRLMST-----KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111          
BLAST of CX287024 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.528e-17
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 3
Query:   63 SGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 311
            S D   R +VG L+W   D +L E F   G+++++K++ DR++GRSRGFGFVT+   K + DAI+ +NG +LDGR+I V+ A+
Sbjct:  202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284          
BLAST of CX287024 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.244e-16
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 3
Query:   78 FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 311
            +R +VG + W   D+ L + F  +G ++ ++++ DRETGRSRGFGFVT   E  M DAI  ++GQ+LDGR I VN A+
Sbjct:  230 YRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307          
BLAST of CX287024 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-16
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 3
Query:   63 SGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 311
            S D   R +VG L+W   D +L E F   G+++++K++ DR++GRSRGFGFVT+   K + DAI+ +NG +LDGR+I V+ A+
Sbjct:  203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAE 285          
BLAST of CX287024 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.621e-16
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 3
Query:   78 FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 311
            FR +VG L W   +  L + F  +G ++E++++ DRETGRSRGFGFVT  D   + +AI  ++GQNL+GR I VN A+
Sbjct:  244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321          
BLAST of CX287024 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.729e-16
Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 3
Query:   75 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 308
            E + FVGGL + TT+ SL + F  YG + E  ++ DRE+ RSRGFGFVTF + +  +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CX287024 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.176e-16
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 3
Query:   66 GDVEFRC--FVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 311
            GD E  C  +VG L W    S L + F  +G ++ +++++DRETGRSRGFGFVT   E  + DAI  ++GQ LDGR + VN A+
Sbjct:  143 GDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226          
BLAST of CX287024 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.053e-15
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 3
Query:   75 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 308
            E + FVGGL++ T + SL + F  YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CX287024 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.053e-15
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 3
Query:   75 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 308
            E + FVGGL++ T + SL + F  YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CX287024 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.797e-15
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 3
Query:   78 FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 311
            +R +VG + W   D+ L + F  +G ++ ++++ DRE+GRSRGFGFVT   E  M +AI  ++GQ LDGR I VN A+
Sbjct:  191 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268          
The following BLAST results are available for this feature:
BLAST of CX287024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
GRP2_ARATH4.570e-1950.00Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
ROC2_NICSY9.528e-1745.7829 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC4_NICSY1.244e-1647.4431 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICPL1.625e-1645.7831 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_ARATH3.621e-1647.4431 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
CIRBP_XENTR4.729e-1648.72Cold-inducible RNA-binding protein OS=Xenopus trop... [more]
ROC1_SPIOL6.176e-1646.4328 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
CIRBP_PONAB1.053e-1550.00Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_HUMAN1.053e-1550.00Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
ROC3_NICSY1.797e-1544.8728 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionC01003G03SK Veg1 Citrus clementina cDNA clone C01003G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287024 ID=CX287024; Name=CX287024; organism=Citrus clementina; type=EST; length=521bp
GTCTCTAAGATTTTTCTTGTAATTTTTTCTTAGTCCCCATTTTAAGTTTT
CTCCTAATGGCTTCAGGCGATGTCGAGTTTAGGTGCTTCGTAGGCGGCCT
GGCCTGGGCCACCACTGACAGCTCTCTCCATGAGGCCTTCGGTGCTTACG
GCGATATCCTTGAATCGAAGATAATTAACGATCGCGAGACTGGAAGATCC
AGAGGATTTGGATTCGTTACCTTCCGCGATGAGAAGTCGATGAGGGACGC
GATCGAAGGCATGAACGGCCAGAATCTCGACGGCCGTAACATCACAGTCA
ACGAGGCCCAGTCCCGCGGAAGCGGTGGCGGTGGCGGTGGTGGTTACGGA
AGCCGCGGCGGTGGCGGATATGGAGGTGGTGGACGCCGTGAAAGTGGTGG
TGGTGGTGGATACGGTGGGAGCCGCGGATACGGAGGTGGCGGTGGTGGAG
GATATGGTGGCCGCCGTGAAGGTGGTTACAGCCGTGATGGTGGATATGGC
GGTGATGGTGGTTCCCGATAC
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