CX287113

Overview
NameCX287113
Unique NameCX287113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length496
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_SULAC (Putative thiazole biosynthetic enzyme OS=Sulfolobus acidocaldarius GN=Saci_0854 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.566e-13
Identity = 47/163 (28.83%), Postives = 78/163 (47.85%), Query Frame = 1
Query:   10 PAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            PA   L E+ +  ++ ++ V I  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    A   +++  +G++  +PG ++     AE   V  T  + PG+ V GM V  + G PRMGP
Sbjct:   86 PADEVLKEMNIRLEKVEDGVYIVDSAEFMAKLAASAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---AGLHVDPVFISAKAVVDATGHDAEVVAVASRKIPELGIV--IPGERSAYSEMAEKLTVEQTGVVAPGLYVAGMSVTEVRGLPRMGP 242          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_META3 (Putative thiazole biosynthetic enzyme OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_0798 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.376e-13
Identity = 43/162 (26.54%), Postives = 84/162 (51.85%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMG 489
            + PA   L E+G++ +E ++ + +  +    + + +  +     K+   +  ED+I+K G+V GVV N   ++        +DP  + AK V+ + GHD     T  ++ + +G++  +PG K+L  +  E+ +++ T+E+ PG+ V GM      G  RMG
Sbjct:   84 QSPADEILSEVGIKLEEGEDGLFVADSVEVPAKLGTGAIDA-GAKVLTGIVVEDVILKEGKVSGVVINSYAINK---AGLHIDPLTINAKYVIDATGHDASVACTLARKNEDLGLV--IPGEKSLWADEGENGLLKYTKELFPGLFVCGMASNATHGGYRMG 239          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_METMJ (Putative thiazole biosynthetic enzyme OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_2251 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.716e-13
Identity = 51/165 (30.91%), Postives = 78/165 (47.27%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDE-QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            ++ A+R LD  G+ Y   ++ Y V K         ++       V+ FN    ED++++G GR+GG+V NW  V M       +DP  M     V + GHD    A   + ++  G   +V G   +    AE  I+  T+E+ PG+ VTGM    + G  RMGP
Sbjct:   77 QEDARRLLDRFGIAYKAFEEGYYVAKSVEAVAK--LTAAACDAGVEFFNLTTVEDVMIRGDGRIGGLVVNWTPVDM---AGLHVDPLTMACTCTVDATGHD----AMIARMVEKKGGALTVKGESFMWAERAESQILAHTKEVFPGLFVTGMAANAVAGECRMGP 232          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_HALSA (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarium GN=VNG_2604G PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.716e-13
Identity = 54/190 (28.42%), Postives = 90/190 (47.37%), Query Frame = 1
Query:    4 RKPAQRFLDELGV--EYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHD----------GPFGATGVKRLK--SIGMIDS-----------VPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGPT 495
            R PA+  LD+LGV  EYDE+++ + +  A    S +++        ++ N     D++V+    V G V NW  V       +C+DP  +EA +VV + GHD          G   A G++ ++  + GM  S            PG  ++ +  +ED +V  T ++  G++  G+  A + G  RMGPT
Sbjct:   83 RSPAEAVLDDLGVPYEYDEENDGLAVADAPHACSAMITAA-CDAGARIQNMTEFTDIVVRDDHAVAGAVVNWTPVHSLPRELTCVDPIALEADVVVDATGHDAVVVSKLHERGVLEADGIEHVEEHATGMDQSGDGEYGAPGHDSPGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMGPT 271          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_HALS3 (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE4651F PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.716e-13
Identity = 54/190 (28.42%), Postives = 90/190 (47.37%), Query Frame = 1
Query:    4 RKPAQRFLDELGV--EYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHD----------GPFGATGVKRLK--SIGMIDS-----------VPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGPT 495
            R PA+  LD+LGV  EYDE+++ + +  A    S +++        ++ N     D++V+    V G V NW  V       +C+DP  +EA +VV + GHD          G   A G++ ++  + GM  S            PG  ++ +  +ED +V  T ++  G++  G+  A + G  RMGPT
Sbjct:   83 RSPAEAVLDDLGVPYEYDEENDGLAVADAPHACSAMITAA-CDAGARIQNMTEFTDIVVRDDHAVAGAVVNWTPVHSLPRELTCVDPIALEADVVVDATGHDAVVVSKLHERGVLEADGIEHVEEHATGMDQSGDGEYGAPGHDSPGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMGPT 271          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_SULIY (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=YG5714_1786 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.465e-13
Identity = 47/164 (28.66%), Postives = 77/164 (46.95%), Query Frame = 1
Query:    7 KPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            KPA   L E+ V   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T ++  G+   GM V  + G PRMGP
Sbjct:   83 KPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGP 240          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_SULIM (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=M1425_1670 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.465e-13
Identity = 47/164 (28.66%), Postives = 77/164 (46.95%), Query Frame = 1
Query:    7 KPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            KPA   L E+ V   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T ++  G+   GM V  + G PRMGP
Sbjct:   83 KPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGP 240          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_SULIL (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=LS215_1798 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.465e-13
Identity = 47/164 (28.66%), Postives = 77/164 (46.95%), Query Frame = 1
Query:    7 KPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            KPA   L E+ V   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T ++  G+   GM V  + G PRMGP
Sbjct:   83 KPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGP 240          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_SULIK (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=M164_1717 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.465e-13
Identity = 47/164 (28.66%), Postives = 77/164 (46.95%), Query Frame = 1
Query:    7 KPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            KPA   L E+ V   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T ++  G+   GM V  + G PRMGP
Sbjct:   83 KPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGP 240          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_SULIA (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.27) GN=M1627_1786 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.465e-13
Identity = 47/164 (28.66%), Postives = 77/164 (46.95%), Query Frame = 1
Query:    7 KPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            KPA   L E+ V   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T ++  G+   GM V  + G PRMGP
Sbjct:   83 KPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGP 240          
The following BLAST results are available for this feature:
BLAST of CX287113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
THI4_SULAC2.566e-1328.83Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_META34.376e-1326.54Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METMJ5.716e-1330.91Putative thiazole biosynthetic enzyme OS=Methanocu... [more]
THI4_HALSA5.716e-1328.42Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALS35.716e-1328.42Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_SULIY7.465e-1328.66Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIM7.465e-1328.66Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIL7.465e-1328.66Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIK7.465e-1328.66Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIA7.465e-1328.66Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]

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Properties
Property NameValue
Genbank descriptionC01004H01SK Veg1 Citrus clementina cDNA clone C01004H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287113 ID=CX287113; Name=CX287113; organism=Citrus clementina; type=EST; length=496bp
AGGCGCAAGCCAGCTCAGAGATTCCTAGACGAGCTCGGCGTCGAGTACGA
CGAGCAAGACAACTACGTCGTGATCAAGCATGCCGCGTTGTTCACTTCAA
CAATCATGAGCAAGCTGTTGGCGAGGCCAAACGTGAAGTTGTTCAACGCT
GTTGCAGCTGAGGATTTGATCGTCAAGGGAGGGAGAGTAGGTGGCGTCGT
CACAAACTGGGCCTTGGTGTCTATGAATCACGACACACAGTCTTGCATGG
ACCCCAATGTGATGGAGGCCAAGATTGTGGTCAGCTCGTGTGGCCATGAC
GGCCCTTTTGGGGCTACCGGTGTTAAGAGGCTTAAGAGTATTGGCATGAT
TGACTCCGTCCCCGGAATGAAAGCTCTCGATATGAACACTGCAGAGGATG
CTATCGTTAGGCTTACCAGGGAGATCGTGCCTGGCATGATTGTCACGGGC
ATGGAAGTCGCATAGATCGACGGTGCCCCTAGAATGGGACCTACAT
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