CX287113

Overview
NameCX287113
Unique NameCX287113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length496
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_METTH (Putative thiazole biosynthetic enzyme OS=Methanobacterium thermoautotrophicum GN=MTH_1620 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 7.465e-13
Identity = 45/161 (27.95%), Postives = 83/161 (51.55%), Query Frame = 1
Query:   16 QRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRL-KSIGMIDS-VPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            +  LDE G+  +  D    +  +   TST+ S+   +  +K+FN ++ ED++++   + G+V NW+ V M       +DP  + A+ V+ + GHD        +++   +   D  + G +++  +  E A++  TRE+ P + V GM    + GAPRMGP
Sbjct:   81 REILDEFGIRSEPYDEGYHVADSVEATSTLCSRA-CQAGLKIFNLMSIEDVMIRDEGITGLVLNWSSVEM---AGLHVDPLTVRARAVIDATGHDCEIVKVVERKIGPELNTPDGRIQGERSMWADVGEAALIENTREVYPNLYVAGMASNAVYGAPRMGP 237          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_FERNB (Putative thiazole biosynthetic enzyme OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=Fnod_1422 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.749e-13
Identity = 51/170 (30.00%), Postives = 78/170 (45.88%), Query Frame = 1
Query:   22 FLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKA-------------LDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            +L E  ++Y ++D ++V+   A+  ++ M     +    +FN V  EDL++   R+ GVV NW         +  +DP  + AK  V   GH     A  V+ L   G+I+SV G                +D    E  +V  T+EI PG+ V GM    + G PRMGP
Sbjct:   83 YLKEHHIKYKKEDEFIVVD--AVHFASAMLYNATKNGAYIFNNVFVEDLVMYNERISGVVINWMPTIKE---KLHVDPITVVAKFTVDGTGHP----ANLVRLLSKRGIINSVKGSSENLCSCGVVEYEFPMDAENGEKFVVENTKEIYPGLYVMGMAAVSVGGGPRMGP 243          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_METS5 (Putative thiazole biosynthetic enzyme OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_2221 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.273e-12
Identity = 50/166 (30.12%), Postives = 78/166 (46.99%), Query Frame = 1
Query:   10 PAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARP---NVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            PA   L E+GV+  + +  V +  ++ F    M+KL A       K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE   V  + E+ PG+   GM V  I   PRMGP
Sbjct:   82 PADEILREIGVKLQKFEEGVYVVDSSEF----MAKLAAATIDAGAKIIHGVTVDDVIFRENPLRVTGVAVEWTATQM---ASLHVDPLFISAKAVVDATGHDAEVISVASRKIPELGIV--IPGEKSAYSEIAEQLTVEQSGEVAPGLYAAGMAVTEIKAIPRMGP 238          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_METTP (Putative thiazole biosynthetic enzyme OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1121 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.172e-12
Identity = 51/166 (30.72%), Postives = 79/166 (47.59%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDE-QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDS-VPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            +K A R LDE  + Y E ++ Y V     +        + A    +L N V+ ED++++ G R+ G+V NW    M       +DP  + A++V+   GHD        K++    + +S V G K +     E  +V  TRE+ PG+IV GM    +   PRMGP
Sbjct:   77 QKEACRILDEYDIWYREFEEGYYVADSIEVVAKLTAGAIDA--GAELINLVSVEDVMIREGDRIVGLVINWTAADM---AGIHVDPLAIRARVVIDGTGHDAAVCRVVQKKIPGAIVGESGVIGEKPMWAALGEKIVVDATREVYPGLIVAGMAATTVAAGPRMGP 237          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_SULTO (Putative thiazole biosynthetic enzyme OS=Sulfolobus tokodaii GN=ST0361 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.837e-12
Identity = 45/163 (27.61%), Postives = 78/163 (47.85%), Query Frame = 1
Query:   10 PAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            PA   L E+ ++ ++ +  V I  +A F + + +  +     K+ + V  +D+I +    +V GV   W    M       +DP  + AK VV + GHD    +   +++  + ++  +PG K+    TAE+  V  T  + PG+   GM V  + G PRMGP
Sbjct:   87 PADEILKEMKIKLNKVEEGVYIVDSAEFMAKLAASAIDA-GAKIIHGVTVDDVIFRENPLKVVGVAVEWTATQM---AGLHVDPLFISAKAVVDATGHDAEVISVAARKIPELNIV--IPGEKSAYSETAEELTVENTGMVAPGLYAAGMAVTEVKGLPRMGP 243          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_NATPD (Putative thiazole biosynthetic enzyme OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=NP5174A PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.837e-12
Identity = 55/193 (28.50%), Postives = 87/193 (45.08%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDE-QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDS---------------------------VPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGPT 495
            R PAQ  L++L V++   QD+  +         + + K       K+ N     D++++   RVGG+V NW  V       +C+DP  +EA +V+ + GHD    A  V +L+  G++++                            PG  ++ +  +EDA+V  T     G+IVTGM  A   G PRMGPT
Sbjct:   84 RDPAQNVLEDLDVDFKRSQDSEGLYVANGPEACSGLIKAACDAGAKMQNMTEFTDIVIREDHRVGGIVMNWTPVHALPREITCVDPIAVEADLVIDATGHD----AVAVSKLQERGVLNAPGIEHADEHNTGMDQTGDDSYGAPGHDSPGHDSMWVGQSEDAVVEHTGLAHEGLIVTGMATATTYGLPRMGPT 272          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_METBF (Putative thiazole biosynthetic enzyme OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=Mbar_A2100 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.837e-12
Identity = 51/167 (30.54%), Postives = 84/167 (50.30%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDE-QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKS--IGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            ++ A R LD+ G+ Y E Q  Y V          I     A    ++FN V+ ED++++   RV G+V NW  V++    +  +DP ++  K+V+   GH+     T ++++ +  IG +  + G K +     E  +V  T+EI PG+IV GM       +PRMGP
Sbjct:   77 QEEACRILDDFGIRYKEYQPGYYVANSVESVGKLISGATSA--GAEVFNLVSFEDVMIRENDRVTGIVVNWGPVTVQ---RLHVDPLMIRTKLVIDGTGHEAVVCNTILRKIPNAKIGNLGKL-GEKPMWSEVGEQLVVDATKEIYPGLIVAGMAANAATCSPRMGP 237          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_METMP (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis GN=MMP1352 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.838e-12
Identity = 54/167 (32.34%), Postives = 79/167 (47.31%), Query Frame = 1
Query:    7 KPAQRFLDELGVEYDEQDNYVVIKHAALFTST---IMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMG 489
            KPA   L E G++ DE     VI    LFT+    + +KL         K+   +  EDLI+K  +V GVV     +         +DP  + AK V+ S GHD     T  ++ K +G+   VPG K++  +  E+++ R TRE+ PG+ V GM         RMG
Sbjct:   82 KPADEILREAGIKLDE-----VIGEPELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKVSGVVIQSYSIEK---AGLHIDPITISAKYVIDSTGHDASVINTLARKNKDLGI--EVPGEKSMWADKGENSLTRNTREVFPGLYVCGMAANAYHAGYRMG 238          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_SULIN (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=YN1551_1140 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.319e-12
Identity = 46/164 (28.05%), Postives = 76/164 (46.34%), Query Frame = 1
Query:    7 KPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            KPA   L E+ V   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  + G K+     AE+  V  T ++  G+   GM V  + G PRMGP
Sbjct:   83 KPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IAGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGP 240          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_METAC (Putative thiazole biosynthetic enzyme OS=Methanosarcina acetivorans GN=MA_2851 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.319e-12
Identity = 47/166 (28.31%), Postives = 86/166 (51.81%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKS--IGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            ++ A R LD+ G+ Y E ++   + ++      +++   +    ++FN V+ ED++++   RV G+V NW  V+     +  +DP ++  K+V+   GH+     T ++++ +  IG +  + G K +     E   V  T+EI PG+IV GM       APRMGP
Sbjct:   77 QEEATRILDDFGIRYKEYESGYYVANSVESVGKLIAGATSA-GAEVFNLVSFEDIMIRENDRVTGIVINWGPVTTQ---RLHVDPLMIRTKLVIDGTGHEAVVCNTILRKIPNAKIGELGLL-GEKPMWSEVGERLAVNATQEIYPGLIVAGMAANAATRAPRMGP 237          
The following BLAST results are available for this feature:
BLAST of CX287113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
THI4_METTH7.465e-1327.95Putative thiazole biosynthetic enzyme OS=Methanoba... [more]
THI4_FERNB9.749e-1330.00Putative thiazole biosynthetic enzyme OS=Fervidoba... [more]
THI4_METS51.273e-1230.12Putative thiazole biosynthetic enzyme OS=Metallosp... [more]
THI4_METTP2.172e-1230.72Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_SULTO2.837e-1227.61Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_NATPD2.837e-1228.50Putative thiazole biosynthetic enzyme OS=Natronomo... [more]
THI4_METBF2.837e-1230.54Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_METMP4.838e-1232.34Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_SULIN6.319e-1228.05Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METAC6.319e-1228.31Putative thiazole biosynthetic enzyme OS=Methanosa... [more]

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Properties
Property NameValue
Genbank descriptionC01004H01SK Veg1 Citrus clementina cDNA clone C01004H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287113 ID=CX287113; Name=CX287113; organism=Citrus clementina; type=EST; length=496bp
AGGCGCAAGCCAGCTCAGAGATTCCTAGACGAGCTCGGCGTCGAGTACGA
CGAGCAAGACAACTACGTCGTGATCAAGCATGCCGCGTTGTTCACTTCAA
CAATCATGAGCAAGCTGTTGGCGAGGCCAAACGTGAAGTTGTTCAACGCT
GTTGCAGCTGAGGATTTGATCGTCAAGGGAGGGAGAGTAGGTGGCGTCGT
CACAAACTGGGCCTTGGTGTCTATGAATCACGACACACAGTCTTGCATGG
ACCCCAATGTGATGGAGGCCAAGATTGTGGTCAGCTCGTGTGGCCATGAC
GGCCCTTTTGGGGCTACCGGTGTTAAGAGGCTTAAGAGTATTGGCATGAT
TGACTCCGTCCCCGGAATGAAAGCTCTCGATATGAACACTGCAGAGGATG
CTATCGTTAGGCTTACCAGGGAGATCGTGCCTGGCATGATTGTCACGGGC
ATGGAAGTCGCATAGATCGACGGTGCCCCTAGAATGGGACCTACAT
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