CX287113

Overview
NameCX287113
Unique NameCX287113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length496
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_DESOH (Putative thiazole biosynthetic enzyme OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=Dole_2426 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.319e-12
Identity = 52/166 (31.33%), Postives = 78/166 (46.99%), Query Frame = 1
Query:    4 RKPAQRFLD--ELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDS--VPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMG 489
            +K A   LD  E+G     +D Y      A+ T T  +   A+  V +FN V  ED++++  R+ G+V NW+ V M       +DP  M A  V+ + GH         K++      DS  + G K++  + AE   +  TRE+ PG+ V GM      G PRMG
Sbjct:   77 QKSALHVLDAMEIGYRLYAEDYYTADAVEAISTLTSQA---AKAGVAIFNCVTVEDVMIRPDRIVGLVLNWSPVEM---AGLHVDPLAMRASFVIDATGHATEVVHVVAKKVPGTLRTDSGKIEGEKSMWSDRAESLTLENTREVYPGLYVAGMAGNATFGGPRMG 236          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_METBU (Putative thiazole biosynthetic enzyme OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_2109 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.253e-12
Identity = 44/165 (26.67%), Postives = 82/165 (49.70%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMID-SVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            ++ A   LDE G+ Y E +N   + ++      ++S   +    ++FN V  ED++++    + G+V NW  V +    +  +DP  + +K+VV   GH     +T  +++    + +  V G K +  +  E  ++  T+E+ P + V GM    + GAPRMGP
Sbjct:   77 QEDALHILDEFGISYHEYENGYYVANSIESVGKLISGATSA-GAEIFNLVNVEDVMIRENDEICGLVINWTAVEIG---KLHVDPLAIRSKVVVDGTGHPAVVCSTVQRKVPGAKLGELGVVGEKPMWADVGEKMLLDTTKEVYPNLYVAGMAANAVAGAPRMGP 237          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_ARCFU (Putative thiazole biosynthetic enzyme OS=Archaeoglobus fulgidus GN=AF_0702 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.253e-12
Identity = 51/167 (30.54%), Postives = 82/167 (49.10%), Query Frame = 1
Query:    7 KPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARP---NVKLFNAVAAEDLIVKGGRVG--GVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            + A+  LD+ G+ Y E  N++V   A       M+KL A+      K+ + V+ ED+I +   +G  GV   W+ V ++      +DP  + ++ VV + GHD    +   ++   I +  SV G ++     AE  IV  T +IV G+   GM VA +   PRMGP
Sbjct:   83 REAKDILDDFGIRYTEHRNFLVADSAEF-----MAKLAAKAIDAGAKIIHGVSVEDVIFRDDPLGVRGVCIQWSAVEISG---LHVDPLFLRSRAVVDATGHDAEVISVAARK---IPLEVSVVGERSAYSEVAEREIVEKTGKIVKGLYAAGMAVAAVHNLPRMGP 238          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_METM7 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0597 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.078e-11
Identity = 53/167 (31.74%), Postives = 77/167 (46.11%), Query Frame = 1
Query:    7 KPAQRFLDELGVEYDEQDNYVVIKHAALFTST---IMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMG 489
            KPA   L E G++ DE D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD     T  ++ K +G+   VPG K++     E+++ R TREI PG+ V GM         RMG
Sbjct:   82 KPADEILREAGIKLDEVDG-----EDELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKIAGVVIQSYAIEK---AGLHIDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMG 238          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_METM5 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0226 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.078e-11
Identity = 53/167 (31.74%), Postives = 77/167 (46.11%), Query Frame = 1
Query:    7 KPAQRFLDELGVEYDEQDNYVVIKHAALFTST---IMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMG 489
            KPA   L E G++ DE D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD     T  ++ K +G+   VPG K++     E+++ R TREI PG+ V GM         RMG
Sbjct:   82 KPADEILREAGIKLDEVDG-----EDELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKIAGVVIQSYAIEK---AGLHIDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMG 238          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_METMA (Putative thiazole biosynthetic enzyme OS=Methanosarcina mazei GN=MM_0222 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.408e-11
Identity = 46/165 (27.88%), Postives = 84/165 (50.91%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMID-SVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            ++ A R LD+ G+ Y E +    + ++      +++   +    ++FN V+ ED++++   RV G+V NW  V+     +  +DP ++  K+V+   GHD     T ++++ +  + +  + G K +     E   V  T+EI PG+IV GM       APRMGP
Sbjct:   77 QEEACRVLDDFGIRYKEYEPGYFVANSVESVGKLIAGATSA-GAEVFNLVSFEDIMIRENDRVTGIVINWGPVTTQ---RLHVDPLMIRTKLVIDGTGHDAVVCNTILRKIPNAKIGEFGILGEKPMWSEVGERLAVDATQEIYPGLIVAGMAANAATRAPRMGP 237          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_METM6 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_1321 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.408e-11
Identity = 53/167 (31.74%), Postives = 77/167 (46.11%), Query Frame = 1
Query:    7 KPAQRFLDELGVEYDEQDNYVVIKHAALFTST---IMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMG 489
            KPA   L E G++ DE D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD     T  ++ K +G+   VPG K++     E+++ R TREI PG+ V GM         RMG
Sbjct:   82 KPADDILREAGIKLDEVDG-----EEELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKIAGVVIQSYAIEK---AGLHIDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMG 238          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_PYRAR (Putative thiazole biosynthetic enzyme OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1498 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.987e-11
Identity = 39/121 (32.23%), Postives = 64/121 (52.89%), Query Frame = 1
Query:  136 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGP 492
            K+   V  +D+I +G   RV G++  W  + M+      +DP    AK V+ + GHD    +   +++  +G+   +PG K+     +E  +V  T ++ PG+ VTGM VA + G PRMGP
Sbjct:  117 KIILGVHVDDVIFRGDPPRVAGLLWIWTPIQMSG---MHVDPLYTMAKAVIDATGHDAEVISVAARKVPELGI--QLPGEKSAWSEVSEKLVVEYTGKVAPGLYVTGMAVAAVHGLPRMGP 232          
The following BLAST results are available for this feature:
BLAST of CX287113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
THI4_DESOH6.319e-1231.33Putative thiazole biosynthetic enzyme OS=Desulfoco... [more]
THI4_METBU8.253e-1226.67Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_ARCFU8.253e-1230.54Putative thiazole biosynthetic enzyme OS=Archaeogl... [more]
THI4_METM71.078e-1131.74Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METM51.078e-1131.74Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METMA1.408e-1127.88Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_METM61.408e-1131.74Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_PYRAR6.987e-1132.23Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]

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Properties
Property NameValue
Genbank descriptionC01004H01SK Veg1 Citrus clementina cDNA clone C01004H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287113 ID=CX287113; Name=CX287113; organism=Citrus clementina; type=EST; length=496bp
AGGCGCAAGCCAGCTCAGAGATTCCTAGACGAGCTCGGCGTCGAGTACGA
CGAGCAAGACAACTACGTCGTGATCAAGCATGCCGCGTTGTTCACTTCAA
CAATCATGAGCAAGCTGTTGGCGAGGCCAAACGTGAAGTTGTTCAACGCT
GTTGCAGCTGAGGATTTGATCGTCAAGGGAGGGAGAGTAGGTGGCGTCGT
CACAAACTGGGCCTTGGTGTCTATGAATCACGACACACAGTCTTGCATGG
ACCCCAATGTGATGGAGGCCAAGATTGTGGTCAGCTCGTGTGGCCATGAC
GGCCCTTTTGGGGCTACCGGTGTTAAGAGGCTTAAGAGTATTGGCATGAT
TGACTCCGTCCCCGGAATGAAAGCTCTCGATATGAACACTGCAGAGGATG
CTATCGTTAGGCTTACCAGGGAGATCGTGCCTGGCATGATTGTCACGGGC
ATGGAAGTCGCATAGATCGACGGTGCCCCTAGAATGGGACCTACAT
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