CX287114

Overview
NameCX287114
Unique NameCX287114
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.478e-34
Identity = 76/188 (40.43%), Postives = 114/188 (60.64%), Query Frame = 1
Query:   13 DLGFPYFSAIDALFNEGVNLPPLKQE---------GFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGM-ISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKS--TTLYGSRTIFFLTPAGTLRPIAIEL 540
            D+ F  FS ID L+   + L   + +         GF N +L        +  + +L ++TP  +  D+F W RD EF RQ LAG+NP +I L+ E P++S LDP +YGP ES +T E+I +E+     ++E+A+++K+LF++DYHD+ LP+VEK+  +K      Y SRTIFF +  G LRP+AIEL
Sbjct:  350 DIPFTCFSDIDNLYKSNIVLGHTEPKDTGLGGFIGGFMNGIL--------NVTETLLKYDTPAVIKWDRFAWLRDNEFGRQALAGVNPVNIELLKELPIRSNLDPALYGPQESVLTEEIIAREVEHYGTTIEKALEEKRLFLVDYHDILLPFVEKINSIKEDPRKTYASRTIFFYSKNGALRPLAIEL 529          
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.762e-32
Identity = 75/175 (42.86%), Postives = 105/175 (60.00%), Query Frame = 1
Query:   22 FPYFSAIDALFNEGVNLPP--LKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            F  F  + +L+  G+ LP   L Q     + LP L +     G+N+L F  P      K  W  DEEF+R+ +AG+NP  IR + E+P KSTLDP +YG   S IT E +E  +GG ++VEEA+  ++LFILDY D F+PY+ ++  L +   Y +RTI FL   GTL+P+AIEL
Sbjct:  307 FESFEDVRSLYEGGIKLPTDILSQI----SPLPALKEIFRTDGENVLQFPPPHVAKVSKSGWMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQTSTITKEQLEINMGG-VTVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIEL 476          
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.142e-31
Identity = 78/177 (44.07%), Postives = 108/177 (61.02%), Query Frame = 1
Query:   16 LGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            L F  F+ +  L+  GV LP      F + + P  ++K I  T G+  L +  P+ M  DK  W  DEEF+R+T+AGLNP  I++I E+PL S LD + YG     I  E +E  +GG ++VE+AI+ KKLFILD+HD  +PY+ K+    +T  Y +RTIFFL   GTL P+AIEL
Sbjct:  294 LEFDNFAEVHKLYEGGVTLPT----NFLSKIAPIPVIKEIFRTDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEEFPLSSKLDTQAYGDHTCIIAKEHLEPNLGG-LTVEQAIQNKKLFILDHHDYLIPYLRKI-NANTTKTYATRTIFFLKDDGTLTPLAIEL 464          
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.823e-29
Identity = 62/133 (46.62%), Postives = 88/133 (66.17%), Query Frame = 1
Query:  142 GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            GD +L    P  +  DKF W  DEEF+R+ LAG+NP  I+ +T +P KSTLDP +YG   S IT   I+  + G ++V+ A+K  +LFILD+HD F+P+++K+ +L    +Y SRTI  L   GTL+P+AIEL
Sbjct:  348 GDQVLKLPLPHVIKEDKFAWRTDEEFAREMLAGVNPVMIKRLTNFPAKSTLDPNVYGDHTSKITEAHIKHNMEG-LTVQNALKGNRLFILDHHDHFMPFLDKINKLDGNFIYASRTILLLKDDGTLKPLAIEL 479          
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.382e-29
Identity = 73/179 (40.78%), Postives = 105/179 (58.66%), Query Frame = 1
Query:   22 FPYFSAIDALFNEGVNLPPLKQEGFW-----NTLLPRLVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            F  F+ +  L+  G+ LP    EG W     + +   ++K I  T G  +L + TP+ +  DK  W  DEEF R+ LAG NP  I  + E+P KS LDP IYG   S ITTE ++ ++ G ++V EAIK  +LFIL++HD+ +P + K+    +T  Y SRT+ FL    TL+P+AIEL
Sbjct:  299 FNSFADVLNLYEGGIKLP----EGPWLKAITDNISSEILKDILQTDGQGLLKYPTPQVIQGDKTAWRTDEEFGREMLAGSNPVLISRLQEFPPKSKLDPTIYGNQNSTITTEHVQDKLNG-LTVNEAIKSNRLFILNHHDIVMPLLRKINMSANTKAYASRTLLFLQDDRTLKPLAIEL 472          
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.382e-29
Identity = 70/175 (40.00%), Postives = 106/175 (60.57%), Query Frame = 1
Query:   22 FPYFSAIDALFNEGVNLPPLKQEGFWNTLLPR-LVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            F  F  +  L+  G+ LP        +T++P  ++K +  T G +IL F  P  +   +  W  DEEF+R+ +AG+NP  IR + E+P KS LDP IYG   S IT + ++ +     +++EA+  ++LF+LDYHD+F+PYV ++ QL S   Y +RTI FL   GTL+P+AIEL
Sbjct:  283 FHSFQDVHDLYEGGIKLP----RDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSLDLD---GYTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIEL 450          
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.110e-29
Identity = 70/175 (40.00%), Postives = 105/175 (60.00%), Query Frame = 1
Query:   16 LGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            L F  F+ +  L+  GV LP      +    +P + +     G+  L +  P+ M  +K  W  DEEF+R+T+AG+NP  I+ + E+P +S LD + +G   S IT E +E  +GG ++VE+AI+ KKLFILD+HD  +PY+ ++    +T  Y +RTIFFL   GTL P+AIEL
Sbjct:  188 LEFDNFAEVHKLYEGGVTLPTNFLSKY--APIPIVKEIFRSDGEQFLKYPPPKVMQVNKSAWMTDEEFARETIAGVNPNVIKSLEEFPPRSKLDTQSFGDHTSIITKEHLEINLGG-LTVEQAIQSKKLFILDHHDYLIPYLRRI-NASATKTYATRTIFFLKSDGTLAPLAIEL 358          
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.110e-29
Identity = 73/175 (41.71%), Postives = 102/175 (58.29%), Query Frame = 1
Query:   22 FPYFSAIDALFNEGVNLP--PLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            F  F  +  ++ EG++LP   L      N  L  L +     G   L F  P+ +  DK  W  DEEF+R+ LAGLNP  I+L+ E+P KS LD E YG   S IT   IE  + G ++VEEA+++++LFILD+HD  +PY+ +V    +T  Y SRT+ FL   GTL+P+ IEL
Sbjct:  299 FDSFEDVLKIYEEGIDLPNQALIDSIVKNIPLEMLKEIFRTDGQKFLKFPVPQVIKEDKTAWRTDEEFAREMLAGLNPVVIQLLKEFPPKSKLDSESYGNQNSTITKSHIEHNLDG-LTVEEALEKERLFILDHHDTLMPYLGRV-NTTTTKTYASRTLLFLKDDGTLKPLVIEL 471          
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.182e-28
Identity = 69/173 (39.88%), Postives = 100/173 (57.80%), Query Frame = 1
Query:   22 FPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            F  F  +  LF  G+ LP         + +P L + +   G+ +L F  P  +   K  W  DEEF R+ LAG+NP  I+ + E+P KS LD  +YG   S +T E +E  +GG+ +VEEA+   +LFILD+HD F+PY+E++  L +   Y +RTI FL    TL+P+AIEL
Sbjct:  306 FDTFEDVRGLFEGGLYLPTDVISKI--SPIPVLKEILRTDGEQVLKFPPPHVIRVTKSAWMTDEEFGREMLAGVNPCLIQRLQEFPPKSKLDVTVYGDQTSTMTKEHLEINLGGL-TVEEALHGNRLFILDHHDAFIPYLERINDLPTAKCYATRTILFLKDDNTLKPLAIEL 475          
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.633e-28
Identity = 71/175 (40.57%), Postives = 104/175 (59.43%), Query Frame = 1
Query:   22 FPYFSAIDALFNEGVNLP--PLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            F  F  +  L+  G+ LP  PL +       L  + + +   G+ IL F TP  +   K  W  DEEF+R+ LAG+NP  I  + E+P KS LDPE+YG   S IT E IE ++ G ++++EAI   KLFIL++HD+ +PY+ ++    +T  Y SRT+ FL   G+L+P+AIEL
Sbjct:  300 FDSFEDVLRLYEGGIKLPQGPLFKALTDAIPLEMIRELLRTDGEGILRFPTPLVIKDSKTAWRTDEEFAREMLAGVNPVIISRLEEFPPKSKLDPELYGNQNSTITAEHIEGKLDG-LTIDEAINSNKLFILNHHDVLIPYLRRI-NTTTTKTYASRTLLFLQDNGSLKPLAIEL 472          
The following BLAST results are available for this feature:
BLAST of CX287114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX6_ARATH5.478e-3440.43Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOXX_SOYBN1.762e-3242.86Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX4_SOYBN1.142e-3144.07Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOX4_ORYSJ1.823e-2946.62Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOXB_SOLLC2.382e-2940.78Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX1_SOYBN2.382e-2940.00Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOXB_PHAVU3.110e-2940.00Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]
LOX1_ARATH3.110e-2941.71Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOXA_PHAVU1.182e-2839.88Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOXA_SOLLC2.633e-2840.57Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01004H02SK Veg1 Citrus clementina cDNA clone C01004H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287114 ID=CX287114; Name=CX287114; organism=Citrus clementina; type=EST; length=541bp
CGAGGCGATCCTGATCTGGGGTTTCCATACTTCTCTGCTATTGACGCACT
CTTCAATGAAGGAGTCAACTTGCCTCCACTCAAACAGGAAGGTTTTTGGA
ACACACTGCTTCCCAGATTGGTTAAGGCAATTGAGGATACAGGAGATAAT
ATTTTGCTGTTTGAGACGCCAGAAACAATGGACAGAGACAAATTCTTTTG
GTTTAGGGATGAGGAATTTTCTAGGCAAACTCTCGCTGGTCTCAACCCGT
ATAGCATAAGGTTGATCACGGAATGGCCGTTGAAAAGCACACTCGATCCT
GAAATTTACGGACCACCAGAATCAGCAATTACCACAGAATTGATTGAAAA
AGAAATTGGAGGAATGATTTCTGTTGAAGAGGCTATAAAACAAAAGAAGT
TGTTCATCTTAGATTACCATGACCTATTTTTACCATATGTGGAAAAAGTG
AGACAACTCAAAAGCACAACGTTGTATGGATCTCGCACAATTTTCTTCCT
AACACCAGCCGGCACATTGAGACCAATAGCTATTGAGCTCA
back to top