CX287114

Overview
NameCX287114
Unique NameCX287114
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 7.928e-25
Identity = 57/137 (41.61%), Postives = 86/137 (62.77%), Query Frame = 1 
Query:  130 IEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            + + G+  L +  P+ +   +  W  DEEF+R+ LAGLNP  I  + E+P KS LD   YG   S+I TE IE  + G ++V+EA++Q KL+ILD+HD  +PY+ ++    + T Y +RT+  L   GTL+P+AIEL
Sbjct:  359 VRNDGERFLKYPLPDILKESRSAWRTDEEFAREMLAGLNPVVISRLQEFPPKSCLDSAKYGNQHSSIRTEHIESNMNG-LNVQEALEQNKLYILDHHDALMPYLTRINSTNTKT-YATRTLLLLQADGTLKPLAIEL 493
The following BLAST results are available for this feature:
BLAST of CX287114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX5_ARATH7.928e-2541.61Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionC01004H02SK Veg1 Citrus clementina cDNA clone C01004H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287114 ID=CX287114; Name=CX287114; organism=Citrus clementina; type=EST; length=541bp
CGAGGCGATCCTGATCTGGGGTTTCCATACTTCTCTGCTATTGACGCACT
CTTCAATGAAGGAGTCAACTTGCCTCCACTCAAACAGGAAGGTTTTTGGA
ACACACTGCTTCCCAGATTGGTTAAGGCAATTGAGGATACAGGAGATAAT
ATTTTGCTGTTTGAGACGCCAGAAACAATGGACAGAGACAAATTCTTTTG
GTTTAGGGATGAGGAATTTTCTAGGCAAACTCTCGCTGGTCTCAACCCGT
ATAGCATAAGGTTGATCACGGAATGGCCGTTGAAAAGCACACTCGATCCT
GAAATTTACGGACCACCAGAATCAGCAATTACCACAGAATTGATTGAAAA
AGAAATTGGAGGAATGATTTCTGTTGAAGAGGCTATAAAACAAAAGAAGT
TGTTCATCTTAGATTACCATGACCTATTTTTACCATATGTGGAAAAAGTG
AGACAACTCAAAAGCACAACGTTGTATGGATCTCGCACAATTTTCTTCCT
AACACCAGCCGGCACATTGAGACCAATAGCTATTGAGCTCA
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