CX287124

Overview
NameCX287124
Unique NameCX287124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length510
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_CHLRE (Ubiquitin-related modifier 1 homolog OS=Chlamydomonas reinhardtii GN=URM1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.563e-21
Identity = 45/81 (55.56%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  118 KVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            K H+VDV P +  ++L    L++W   N+++ERPE+F+KG +VRPG+LVL+N+CDWELSG  ++T+ + DVVVFISTLHGG
Sbjct:   20 KQHDVDV-PVQEGKQLTAGHLIAWTRDNMLRERPELFVKGHTVRPGILVLINECDWELSGATESTISDGDVVVFISTLHGG 99          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_DROYA (Ubiquitin-related modifier 1 homolog OS=Drosophila yakuba GN=GE20399 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.688e-19
Identity = 40/70 (57.14%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  151 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            G++K  + +LL W+  N++ ERPE+F++GD+VRPG+LVL+ND DWEL G+LD  L+  D V+FISTLHGG
Sbjct:   32 GNQKWTIANLLKWMHANILTERPELFLQGDTVRPGILVLINDTDWELLGELDYELQPNDNVLFISTLHGG 101          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_DROER (Ubiquitin-related modifier 1 homolog OS=Drosophila erecta GN=GG14947 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 5.688e-19
Identity = 40/70 (57.14%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  151 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            G++K  + +LL W+  N++ ERPE+F++GD+VRPG+LVL+ND DWEL G+LD  L+  D V+FISTLHGG
Sbjct:   32 GNQKWTIANLLKWMHANILTERPELFLQGDTVRPGILVLINDTDWELLGELDYELQPNDNVLFISTLHGG 101          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_DROME (Ubiquitin-related modifier 1 homolog OS=Drosophila melanogaster GN=CG33276 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 7.429e-19
Identity = 40/70 (57.14%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  151 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            G +K  + +LL W+  N++ ERPE+F++GD+VRPG+LVL+ND DWEL G+LD  L+  D V+FISTLHGG
Sbjct:   32 GKQKWTIANLLKWMHANILTERPELFLQGDTVRPGILVLINDTDWELLGELDYELQPNDNVLFISTLHGG 101          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_DROPS (Ubiquitin-related modifier 1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA23607 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.267e-18
Identity = 40/70 (57.14%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  151 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            G +K  + +LL W+  N++ ERPE+F++GD+VRPG+LVL+ND DWEL G+LD  L+  D V+FISTLHGG
Sbjct:   30 GHKKWTIANLLKWMHANILTERPELFLQGDTVRPGILVLINDTDWELLGELDYELQANDNVLFISTLHGG 99          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_DROPE (Ubiquitin-related modifier 1 homolog OS=Drosophila persimilis GN=GL24132 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.267e-18
Identity = 40/70 (57.14%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  151 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            G +K  + +LL W+  N++ ERPE+F++GD+VRPG+LVL+ND DWEL G+LD  L+  D V+FISTLHGG
Sbjct:   30 GHKKWTIANLLKWMHANILTERPELFLQGDTVRPGILVLINDTDWELLGELDYELQANDNVLFISTLHGG 99          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_DROAN (Ubiquitin-related modifier 1 homolog OS=Drosophila ananassae GN=GF23776 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.267e-18
Identity = 40/70 (57.14%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  151 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            G++K  + +LL W+  N++ ERPE+F++GD+VRPG+LVL+ND DWEL G+LD  L+  D V+FISTLHGG
Sbjct:   32 GTKKWNIANLLKWMHANILTERPELFLQGDTVRPGILVLINDTDWELLGELDYELQPNDNVLFISTLHGG 101          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_DROMO (Ubiquitin-related modifier 1 homolog OS=Drosophila mojavensis GN=GI12450 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.823e-18
Identity = 39/70 (55.71%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  151 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            G++K  + +LL W+  N++ ERPE+F++GD+VRPG+LVL+ND DWEL G+L+  L+  D V+FISTLHGG
Sbjct:   35 GTQKWTIANLLKWMHANILTERPELFIQGDTVRPGILVLINDTDWELLGELEYELKANDNVLFISTLHGG 104          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_DROSI (Ubiquitin-related modifier 1 homolog OS=Drosophila simulans GN=GD13043 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.687e-18
Identity = 39/70 (55.71%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  151 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            G++K  + +LL W+  N++ ERPE+F++ D+VRPG+LVL+ND DWEL G+LD  L+  D V+FISTLHGG
Sbjct:   32 GNQKWTISNLLKWMHANILTERPELFLQEDTVRPGILVLINDTDWELLGELDYELQPNDNVLFISTLHGG 101          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_DROSE (Ubiquitin-related modifier 1 homolog OS=Drosophila sechellia GN=GM13742 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.815e-18
Identity = 39/70 (55.71%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  151 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            G++K  + +LL W+  N++ ERPE+F++ D+VRPG+LVL+ND DWEL G+LD  L+  D V+FISTLHGG
Sbjct:   32 GNQKWTIANLLKWMHANILTERPELFLQEDTVRPGILVLINDTDWELLGELDYELQPNDNVLFISTLHGG 101          
The following BLAST results are available for this feature:
BLAST of CX287124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
URM1_CHLRE3.563e-2155.56Ubiquitin-related modifier 1 homolog OS=Chlamydomo... [more]
URM1_DROYA5.688e-1957.14Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DROER5.688e-1957.14Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DROME7.429e-1957.14Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DROPS1.267e-1857.14Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DROPE1.267e-1857.14Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DROAN1.267e-1857.14Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DROMO2.823e-1855.71Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DROSI3.687e-1855.71Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DROSE4.815e-1855.71Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]

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Properties
Property NameValue
Genbank descriptionC01005A01SK Veg1 Citrus clementina cDNA clone C01005A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287124 ID=CX287124; Name=CX287124; organism=Citrus clementina; type=EST; length=510bp
GTTCTCACATCTCTGTTCTTCTAGGGTTTTGCAAATTTCTGAAATTTCTG
CAAATCTTGAACCATGCAACTGACTCTAGAATTCGGTGGAGGGTTAGAGC
TTCTTTGTGATTCGGTAAAGGTCCATAATGTCGATGTTGTTCCACCAAAA
GGATCAGAGAAGTTGATTATGAAAGATTTGCTTTCTTGGGTCGGCACCAA
TTTGATCAAGGAGAGGCCTGAAATGTTCATGAAAGGAGATTCTGTGAGAC
CTGGTGTTCTAGTACTTGTGAATGATTGTGACTGGGAGCTCAGTGGGCAG
CTGGATACCACACTGGAGGAAAAGGATGTGGTTGTTTTTATTTCAACTTT
ACACGGCGGGTGATAAGCTAAATTATTGTAATTTCTTAGATGATAAGCAC
TTGTTATTGAAAATTGGTTGTACCCTTGTCTGGGTATTGAGTATGCTTGT
TGAAGCATGTGGAATGAGATGAAGATGTTGAATGTTTTGTTGAAAAAAAA
AAAAAAAAAA
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