CX287124

Overview
NameCX287124
Unique NameCX287124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length510
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_BOMMO (Ubiquitin-related modifier 1 homolog OS=Bombyx mori PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.073e-17
Identity = 40/74 (54.05%), Postives = 56/74 (75.68%), Query Frame = 1
Query:  139 VPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            +P   ++   +K+LL W+  NL+ ER E+F+K DSVRPG+LVL+N+ DWEL GQL+  L+E D ++FISTLHGG
Sbjct:   36 LPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHGG 109          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_DROWI (Ubiquitin-related modifier 1 homolog OS=Drosophila willistoni GN=GK16796 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.401e-17
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  151 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            GS+K  +  LL W+  N++   PE+F++GD+VRPG+LVLVND DWEL G LD  L++ D ++FISTLHGG
Sbjct:   31 GSQKWTIGSLLKWMHANILTRSPELFIQGDTVRPGILVLVNDTDWELLGGLDYELQQNDNILFISTLHGG 100          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_DROGR (Ubiquitin-related modifier 1 homolog OS=Drosophila grimshawi GN=GH16604 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.401e-17
Identity = 38/70 (54.29%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  151 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            G++K  + +LL W+  N++ ER E+F++GD+VRPG+LVL+ND DWEL G+L+  L+  D V+FISTLHGG
Sbjct:   35 GAQKWTIAELLKWMHANILTERAELFIQGDTVRPGILVLINDTDWELLGELEYELQPNDNVLFISTLHGG 104          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_DICDI (Ubiquitin-related modifier 1 homolog OS=Dictyostelium discoideum GN=urm1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.401e-17
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  109 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            D  KVH ++        ++ +KDL+ ++  NL+KER E+F+  D+VRPG+LVL+ND DWEL G +   +E+KD ++FISTLHGG
Sbjct:   16 DKKKVHEIEF---SDKNEIPLKDLILYMRDNLLKERSELFVVDDTVRPGILVLINDADWELFGGISYNVEDKDTIIFISTLHGG 96          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_DROVI (Ubiquitin-related modifier 1 homolog OS=Drosophila virilis GN=GJ12350 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.830e-17
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  151 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            G +K  + +LL W+  N++ ERPE+F++  +VRPG+LVL+ND DWEL G+LD  L++ D V+FISTLHGG
Sbjct:   30 GDQKWTIANLLKWMHANILTERPELFIQESTVRPGILVLINDTDWELLGELDYELQQNDNVLFISTLHGG 99          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_AEDAE (Ubiquitin-related modifier 1 homolog OS=Aedes aegypti GN=AAEL008680 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.713e-15
Identity = 37/82 (45.12%), Postives = 59/82 (71.95%), Query Frame = 1
Query:  115 VKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            VK H   VVP  GS+ ++++++L W+  NL+   P +F++ ++VRPG+LV++ND DW+L G+ D  L+  D ++FISTLHGG
Sbjct:   31 VKEH---VVPLDGSKIVLLEEMLRWLRDNLLTGDPNLFLQENTVRPGILVMINDTDWDLMGETDYILQPGDHILFISTLHGG 109          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_CULQU (Ubiquitin-related modifier 1 homolog OS=Culex quinquefasciatus GN=CPIJ002088 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.508e-15
Identity = 34/75 (45.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:  136 VVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            VVP  GS+ ++++++L W+  NL+     +FM+ ++VRPG+LV++ND DW+L G++D  L+  D ++FISTLHGG
Sbjct:   35 VVPLDGSKIVLLEEMLRWLRDNLLTGDAGLFMQENTVRPGILVMINDTDWDLMGEIDYILQPGDHILFISTLHGG 109          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_KLULA (Ubiquitin-related modifier 1 OS=Kluyveromyces lactis GN=URM1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.510e-14
Identity = 34/72 (47.22%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  151 GSEKLIMKDLLSWVGTNLIKERPEM--FMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            G +++ + DL+ W+  NLI+   ++  F++ DS+RPG+L L+ND DWEL G+ +  LE+ DVV F STLHGG
Sbjct:   30 GKDEINVGDLIQWIVDNLIEHEGDVNVFLENDSIRPGILTLINDTDWELEGEKEYVLEDGDVVSFTSTLHGG 101          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_ANOGA (Ubiquitin-related modifier 1 homolog OS=Anopheles gambiae GN=AGAP005823 PE=3 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 3.571e-13
Identity = 33/82 (40.24%), Postives = 58/82 (70.73%), Query Frame = 1
Query:  115 VKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            VK H   +VP  GS+ ++++++L W+  +L+     +F++ ++VRPG+LV++ND DW+L G+ +  L+  D ++FISTLHGG
Sbjct:   31 VKEH---IVPLDGSKIVLLEEMLRWLRDHLLTGDAGLFLQENTVRPGILVMINDTDWDLMGETEYILQPGDHILFISTLHGG 109          
BLAST of CX287124 vs. ExPASy Swiss-Prot
Match: URM1_COPC7 (Ubiquitin-related modifier 1 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=URM1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.664e-13
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1
Query:  142 PPKGSEKLIMKD---LLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 360
            PP   + L   D   L+  +  +L++ER E+F++  +VRPG+LVLVND DWEL G+ D  L++ D VVFISTLHGG
Sbjct:   49 PPPKDDLLKPADITYLIHHMRDHLLQEREELFVENGTVRPGILVLVNDTDWELEGEGDYVLKDGDEVVFISTLHGG 124          
The following BLAST results are available for this feature:
BLAST of CX287124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
URM1_BOMMO1.073e-1754.05Ubiquitin-related modifier 1 homolog OS=Bombyx mor... [more]
URM1_DROWI1.401e-1755.71Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DROGR1.401e-1754.29Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DICDI1.401e-1747.62Ubiquitin-related modifier 1 homolog OS=Dictyostel... [more]
URM1_DROVI1.830e-1754.29Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_AEDAE1.713e-1545.12Ubiquitin-related modifier 1 homolog OS=Aedes aegy... [more]
URM1_CULQU6.508e-1545.33Ubiquitin-related modifier 1 homolog OS=Culex quin... [more]
URM1_KLULA5.510e-1447.22Ubiquitin-related modifier 1 OS=Kluyveromyces lact... [more]
URM1_ANOGA3.571e-1340.24Ubiquitin-related modifier 1 homolog OS=Anopheles ... [more]
URM1_COPC74.664e-1350.00Ubiquitin-related modifier 1 OS=Coprinopsis cinere... [more]

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Properties
Property NameValue
Genbank descriptionC01005A01SK Veg1 Citrus clementina cDNA clone C01005A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287124 ID=CX287124; Name=CX287124; organism=Citrus clementina; type=EST; length=510bp
GTTCTCACATCTCTGTTCTTCTAGGGTTTTGCAAATTTCTGAAATTTCTG
CAAATCTTGAACCATGCAACTGACTCTAGAATTCGGTGGAGGGTTAGAGC
TTCTTTGTGATTCGGTAAAGGTCCATAATGTCGATGTTGTTCCACCAAAA
GGATCAGAGAAGTTGATTATGAAAGATTTGCTTTCTTGGGTCGGCACCAA
TTTGATCAAGGAGAGGCCTGAAATGTTCATGAAAGGAGATTCTGTGAGAC
CTGGTGTTCTAGTACTTGTGAATGATTGTGACTGGGAGCTCAGTGGGCAG
CTGGATACCACACTGGAGGAAAAGGATGTGGTTGTTTTTATTTCAACTTT
ACACGGCGGGTGATAAGCTAAATTATTGTAATTTCTTAGATGATAAGCAC
TTGTTATTGAAAATTGGTTGTACCCTTGTCTGGGTATTGAGTATGCTTGT
TGAAGCATGTGGAATGAGATGAAGATGTTGAATGTTTTGTTGAAAAAAAA
AAAAAAAAAA
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