CX287126

Overview
NameCX287126
Unique NameCX287126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287126 vs. ExPASy Swiss-Prot
Match: CTSB_DICDI (Cathepsin B OS=Dictyostelium discoideum GN=ctsB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.894e-14
Identity = 56/204 (27.45%), Postives = 89/204 (43.63%), Query Frame = 1
Query:   22 DWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKA-----IDGSCDTY----------RKNAKVVTIDDYEDVPL-----NDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWG 570
            +W     ++++++Q  CGSCWAF    +      I     + LS  ++V CD + N GC GG    A+ ++   G + +E+  PY           C  +          + N+ ++   D   +       +DE  +Q+ V N PV          F  Y+SG++    G  L  H V  VG+GT NG DY+   N W +SWG
Sbjct:   88 NWPNCTTISQIQNQARCGSCWAFGATESATDRLCIHNNENVQLSFMDMVTCDETDN-GCEGGDAFSAWNWLRKQGAV-SEECLPYTIPTCPPAQQPCLNFVNTPSCTKECQSNSSLIYSQDKHKMAKIYSFDSDEAIMQEIVTNGPVEACFTVFE-DFLAYKSGVYVHTTGKDLGGHCVKLVGFGTLNGVDYYAANNQWTTSWG 288          
BLAST of CX287126 vs. ExPASy Swiss-Prot
Match: CYSP4_CARCN (Cysteine proteinase 4 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.219e-14
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1
Query:   10 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTG 135
            P+S+DWRKKGAV  VK+QGSCGSCWAFSTI  VEGINKI TG
Sbjct:    2 PESIDWRKKGAVTPVKNQGSCGSCWAFSTIVTVEGINKIRTG 43          
BLAST of CX287126 vs. ExPASy Swiss-Prot
Match: CYSP2_CARCN (Cysteine proteinase 2 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.196e-14
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 1
Query:   10 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTG 135
            P SVDWR+KGAV  VKDQ  CGSCWAFST+A VEGINKIVTG
Sbjct:    2 PGSVDWRQKGAVTPVKDQNPCGSCWAFSTVATVEGINKIVTG 43          
BLAST of CX287126 vs. ExPASy Swiss-Prot
Match: TINAL_HUMAN (Tubulointerstitial nephritis antigen-like OS=Homo sapiens GN=TINAGL1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.603e-13
Identity = 67/234 (28.63%), Postives = 103/234 (44.02%), Query Frame = 1
Query:    1 EALPDSVDWRKK--GAVAEVKDQGSCGSCWAFSTIA-AVEGINKIVTGSLIS-LSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAID---------------------GSCDTYRKNAKVVTIDDYEDVPL-----NDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFT------GRCGTSLDHGVTAV---GYGTENGAD-----YWIVKNSWGSSWG 570
            E LP + +  +K    + E  DQG+C   WAFST A A + ++    G +   LS Q L+ CDT   +GC GG +D A+ F +   G+ ++  YP+   +                          +  N+ V   D Y+  P+     ND++ +++ + N PV   +E     F LY+ GI++      GR      HG  +V   G+G E   D     YW   NSWG +WG
Sbjct:  201 EVLPTAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHQQQGCRGGRLDGAWWF-LRRRGVVSDHCYPFSGRERDEAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMENGPVQALME-VHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWG 432          
BLAST of CX287126 vs. ExPASy Swiss-Prot
Match: CATZ_BOVIN (Cathepsin Z OS=Bos taurus GN=CTSZ PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.603e-13
Identity = 66/212 (31.13%), Postives = 95/212 (44.81%), Query Frame = 1
Query:    7 LPDSVDWRKKGAV---AEVKDQGS---CGSCWAF-STIAAVEGINKIVTGSLIS--LSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYR--------------KNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTS-LDHGVTAVGYGTENGADYWIVKNSWGSSWG 570
            LP S DWR    V   +  ++Q     CGSCWA  ST A  + IN    G+  S  LS Q ++DC  + +  C GG     +E+     GI  E    Y+A D  CD +               KN  +  + DY  +    EK + +   N P+S  I         Y  GI++     + ++H V+  G+G  +G +YWIV+NSWG  WG
Sbjct:   63 LPKSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCGDAGS--CEGGNDLPVWEYA-HRHGIPDETCNNYQAKDQECDKFNQCGTCTEFKECHVIKNYTLWKVGDYGSLS-GREKMMAEIYTNGPISCGIMATEKMSN-YTGGIYSEYNDQAFINHIVSVAGWGVSDGMEYWIVRNSWGEPWG 269          
BLAST of CX287126 vs. ExPASy Swiss-Prot
Match: TINAL_RAT (Tubulointerstitial nephritis antigen-like OS=Rattus norvegicus GN=Tinagl1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.094e-13
Identity = 72/235 (30.64%), Postives = 108/235 (45.96%), Query Frame = 1
Query:    1 EALPDSVDWRKK--GAVAEVKDQGSCGSCWAFSTIA-AVEGINKIVTGSLIS-LSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPY---KAIDGSCDTYR-------------------KNAKVVTIDDYEDVPL----NDEKALQK-AVANQPVSVAIEGGGMAFQLYESGIFT------GRCGTSLDHGVTAV---GYGTENGAD-----YWIVKNSWGSSWG 570
            E LP + +  +K    + E  DQG+C   WAFST A A + ++    G +   LS Q L+ CDT + +GC GG +D A+ F +   G+ +++ YP+   +  D +  T R                    N++V + D Y+  P+    +DEK + K  + N PV   +E     F LY+ GI++      GR      HG  +V   G+G E   D     YW   NSWG  WG
Sbjct:  200 EVLPTAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPILSPQNLLSCDTHHQKGCRGGRLDGAWWF-LRRRGVVSDNCYPFSGREQNDEASPTPRCMMHSRAMGRGKRQATSRCPNSQVDSNDIYQVTPVYRLASDEKEIMKELMENGPVQALME-VHEDFFLYQRGIYSHTPVSQGRPEQYRRHGTHSVKITGWGEETLPDGRTIKYWTAANSWGPWWG 432          
BLAST of CX287126 vs. ExPASy Swiss-Prot
Match: CATZ_MOUSE (Cathepsin Z OS=Mus musculus GN=Ctsz PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.094e-13
Identity = 68/216 (31.48%), Postives = 98/216 (45.37%), Query Frame = 1
Query:    7 LPDSVDWRKKGAV---AEVKDQGS---CGSCWAF-STIAAVEGINKIVTGSL--ISLSEQELVDCDTSYNEGCNGG----LMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYRKNAKVV------TIDDYEDVPLND-------EKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTS-LDHGVTAVGYGTEN-GADYWIVKNSWGSSWG 570
            LP + DWR    V   +  ++Q     CGSCWA  ST A  + IN    G+   I LS Q ++DC  + +  C GG    + +YA +      GI  E    Y+A D  CD + +           TI +Y    + D       EK + +  AN P+S  I    M    Y  GI+      + ++H ++  G+G  N G +YWIV+NSWG  WG
Sbjct:   64 LPKNWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSILLSVQNVIDCGNAGS--CEGGNDLPVWEYAHKH-----GIPDETCNNYQAKDQDCDKFNQCGTCTEFKECHTIQNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATEMMSN-YTGGIYAEHQDQAVINHIISVAGWGVSNDGIEYWIVRNSWGEPWG 271          
BLAST of CX287126 vs. ExPASy Swiss-Prot
Match: TINAL_MOUSE (Tubulointerstitial nephritis antigen-like OS=Mus musculus GN=Tinagl1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 70/234 (29.91%), Postives = 106/234 (45.30%), Query Frame = 1
Query:    1 EALPDSVDWRKK--GAVAEVKDQGSCGSCWAFSTIA-AVEGINKIVTGSLIS-LSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGS-------CDTYRK--------------NAKVVTIDDYEDVPL----NDEKALQK-AVANQPVSVAIEGGGMAFQLYESGIFT------GRCGTSLDHGVTAV---GYGTENGAD-----YWIVKNSWGSSWG 570
            E LP + +  +K    + E  DQG+C   WAFST A A + ++    G +   LS Q L+ CDT + +GC GG +D A+ F +   G+ +++ YP+   + +       C  + +              N +V + D Y+  P     +DEK + K  + N PV   +E     F LY+ GI++      GR      HG  +V   G+G E   D     YW   NSWG  WG
Sbjct:  200 EVLPTAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPILSPQNLLSCDTHHQQGCRGGRLDGAWWF-LRRRGVVSDNCYPFSGREQNEASPTPRCMMHSRAMGRGKRQATSRCPNGQVDSNDIYQVTPAYRLGSDEKEIMKELMENGPVQALME-VHEDFFLYQRGIYSHTPVSQGRPEQYRRHGTHSVKITGWGEETLPDGRTIKYWTAANSWGPWWG 431          
BLAST of CX287126 vs. ExPASy Swiss-Prot
Match: CATZ_RAT (Cathepsin Z OS=Rattus norvegicus GN=Ctsz PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.664e-13
Identity = 68/216 (31.48%), Postives = 98/216 (45.37%), Query Frame = 1
Query:    7 LPDSVDWRKKGAV---AEVKDQGS---CGSCWAF-STIAAVEGINKIVTGSLIS--LSEQELVDCDTSYNEGCNGG----LMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYRKNAKVV------TIDDYEDVPLND-------EKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSL-DHGVTAVGYGTEN-GADYWIVKNSWGSSWG 570
            LP + DWR    V   +  ++Q     CGSCWA  ST A  + IN    G+  S  LS Q ++DC  + +  C GG    + +YA +      GI  E    Y+A D  CD + +           TI +Y    + D       EK + +  AN P+S  I         Y  GI+T     ++ +H ++  G+G  N G +YWIV+NSWG  WG
Sbjct:   64 LPKNWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSALADRINIKRKGAWPSTLLSVQNVIDCGNAGS--CEGGNDLPVWEYAHKH-----GIPDETCNNYQAKDQECDKFNQCGTCTEFKECHTIQNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERMSN-YTGGIYTEYQNQAIINHIISVAGWGVSNDGIEYWIVRNSWGEPWG 271          
The following BLAST results are available for this feature:
BLAST of CX287126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
CTSB_DICDI1.894e-1427.45Cathepsin B OS=Dictyostelium discoideum GN=ctsB PE... [more]
CYSP4_CARCN4.219e-1480.95Cysteine proteinase 4 (Fragment) OS=Carica candama... [more]
CYSP2_CARCN7.196e-1480.95Cysteine proteinase 2 (Fragment) OS=Carica candama... [more]
TINAL_HUMAN1.603e-1328.63Tubulointerstitial nephritis antigen-like OS=Homo ... [more]
CATZ_BOVIN1.603e-1331.13Cathepsin Z OS=Bos taurus GN=CTSZ PE=2 SV=2[more]
TINAL_RAT2.094e-1330.64Tubulointerstitial nephritis antigen-like OS=Rattu... [more]
CATZ_MOUSE2.094e-1331.48Cathepsin Z OS=Mus musculus GN=Ctsz PE=2 SV=1[more]
TINAL_MOUSE2.734e-1329.91Tubulointerstitial nephritis antigen-like OS=Mus m... [more]
CATZ_RAT4.664e-1331.48Cathepsin Z OS=Rattus norvegicus GN=Ctsz PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01005A03SK Veg1 Citrus clementina cDNA clone C01005A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287126 ID=CX287126; Name=CX287126; organism=Citrus clementina; type=EST; length=570bp
GAGGCGTTGCCGGACTCTGTTGATTGGAGGAAGAAAGGAGCTGTCGCTGA
AGTTAAAGATCAAGGAAGCTGTGGGAGTTGCTGGGCATTTTCAACCATTG
CTGCTGTAGAGGGTATAAACAAGATTGTTACAGGTAGCCTGATCTCACTA
TCCGAGCAGGAGTTGGTGGATTGTGATACATCATATAATGAAGGATGTAA
TGGTGGTTTGATGGACTATGCATTCGAGTTCATTATTGATAATGGAGGTA
TTGACACAGAAGATGATTACCCCTACAAAGCCATTGATGGTAGCTGTGAC
ACATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAGATGT
TCCCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAACCCG
TGAGTGTTGCGATTGAAGGAGGTGGCATGGCATTCCAGTTATATGAATCG
GGTATATTTACGGGAAGATGTGGGACATCTCTGGACCATGGTGTTACTGC
TGTTGGATATGGCACAGAAAATGGAGCTGATTACTGGATTGTGAAGAATT
CATGGGGCAGTAGCTGGGGA
back to top