CX287129

Overview
NameCX287129
Unique NameCX287129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS_NITVU (Ribulose bisphosphate carboxylase small chain OS=Nitrobacter vulgaris GN=cbbS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.813e-13
Identity = 40/115 (34.78%), Postives = 60/115 (52.17%), Query Frame = 1
Query:  190 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            M V     LKK+ET SYLP ++ E + ++I++ I  GW P +E   EKG   +            YW MWKLP++G      V+ E+    +E+P   VR + +DN  Q Q ++F
Sbjct:    1 MAVQAYRSLKKYETFSYLPQMTPEQVRRQIAHAIAQGWNPAVE-HTEKGTPAK----------ASYWYMWKLPLFGEQSVDAVVAEIEACHREFPDQMVRFVAYDNYAQSQGMAF 104          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS_RHOCA (Ribulose bisphosphate carboxylase small chain OS=Rhodobacter capsulatus GN=cbbS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.368e-13
Identity = 35/102 (34.31%), Postives = 55/102 (53.92%), Query Frame = 1
Query:  217 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 522
            +K  T SYLPP+ +  + +++ +++++GW P +E            H  P +    YW MWKLPM+G TD   +L E+    +  P   VR+IG+DN  Q Q
Sbjct:   17 RKMGTFSYLPPMGEAEIRRQVEWIVKNGWNPGIE------------HTEPDFAAQIYWYMWKLPMFGETDVDAILAELKACHEANPGHHVRLIGYDNFTQSQ 106          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.368e-13
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1
Query:  361 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            S  Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F
Sbjct:   10 SSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGF 67          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS1_THIFE (Ribulose bisphosphate carboxylase small chain 1 OS=Thiobacillus ferrooxidans GN=cbbS1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.093e-13
Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 1
Query:  220 KFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            K+ET SYLP +  E + ++I+YLI  GW P +E            H  P      YW MWKLPM+G      V+ E+    + +P   VR++G+DN  Q Q  +F
Sbjct:   12 KYETFSYLPAMGPEKMRRQIAYLINQGWNPGIE------------HVEPERASTYYWYMWKLPMFGEQSVDTVIMELEACHRAHPGHHVRLVGYDNYSQSQGSAF 104          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS_SYNPX (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH8102) GN=cbbS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 34/103 (33.01%), Postives = 50/103 (48.54%), Query Frame = 1
Query:  226 ETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            ET  +LPP++ + +  +I+Y+I  GW P +E            H  P      YW+ WKLP +G  D   V+ E+    + YP   VRI+G+D   Q Q   F
Sbjct:   17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACF 107          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS_SYNPW (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH7803) GN=cbbS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 34/103 (33.01%), Postives = 50/103 (48.54%), Query Frame = 1
Query:  226 ETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            ET  +LPP++ + +  +I+Y+I  GW P +E            H  P      YW+ WKLP +G  D   V+ E+    + YP   VRI+G+D   Q Q   F
Sbjct:   17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACF 107          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS_HALNC (Ribulose bisphosphate carboxylase small chain OS=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) GN=cbbS PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.217e-11
Identity = 35/105 (33.33%), Postives = 53/105 (50.48%), Query Frame = 1
Query:  220 KFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            K+ET SYLPP++ E +  +I Y I  GW P +E    K  +             +YW MWKLP +G  +   VL E+   +  YP   V+++ +DN  Q   ++F
Sbjct:   12 KYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNSM------------NQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQSLGLAF 104          
The following BLAST results are available for this feature:
BLAST of CX287129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS_NITVU1.813e-1334.78Ribulose bisphosphate carboxylase small chain OS=N... [more]
RBS_RHOCA2.368e-1334.31Ribulose bisphosphate carboxylase small chain OS=R... [more]
RBS2_ACECL2.368e-1353.45Ribulose bisphosphate carboxylase small chain 2 (F... [more]
RBS1_THIFE3.093e-1336.19Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_SYNPX1.697e-1133.01Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNPW1.697e-1133.01Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_HALNC2.217e-1133.33Ribulose bisphosphate carboxylase small chain OS=H... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01005A07SK Veg1 Citrus clementina cDNA clone C01005A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287129 ID=CX287129; Name=CX287129; organism=Citrus clementina; type=EST; length=535bp
GAGCAAGTACCAATGGCTTCCTCAATGATCTCATCGGCCACCGTTGCCAC
CGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCG
GCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGAC
ATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTG
GCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCAC
TGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTATCCGCTCCGGC
TGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGA
GCACCACAGGTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGA
AGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTT
GGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATT
TGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCA
back to top