CX287129

Overview
NameCX287129
Unique NameCX287129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 1.459e-71
Identity = 127/174 (72.99%), Postives = 149/174 (85.63%), Query Frame = 1
Query:   13 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MASS++SSA VAT  R++ AQASMVAPFTGLKS+++FP ++KTN DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LS E LL EI YL+++GW+PCLEFE E G+VYREH  SPGYYDGRYWTMWKLPM+GCTDATQV  EV E +K YP + +RIIGFDN RQVQCISF
Sbjct:    1 MASSIMSSAAVAT--RSNGAQASMVAPFTGLKSNASFPVSRKTNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISF 172          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 1.906e-71
Identity = 128/174 (73.56%), Postives = 149/174 (85.63%), Query Frame = 1
Query:   13 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            ++S M+SSA  AT  RAS AQ+SMVAPFTGLKS+SAFP T+K N D++ + SNGGRVQCMKVWP  G+KKFETLSYLP + DEAL+K+I YL+RS WIPCLEF   KG+V+RE+HRSPGYYDGRYWTMWKLPM+GCTDA QV KEV E +KEYPH+F+RIIGFDN RQVQCISF
Sbjct:    2 VSSMMVSSA--ATFTRASPAQSSMVAPFTGLKSASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEF-CPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISF 172          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 1.906e-71
Identity = 122/174 (70.11%), Postives = 147/174 (84.48%), Query Frame = 1
Query:   13 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MASS++S+A    A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G+KKFETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SF
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSF 173          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 4.246e-71
Identity = 125/172 (72.67%), Postives = 145/172 (84.30%), Query Frame = 1
Query:   19 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            +SMISS+ V T +RAS  Q++ VAPF GLKS + FP  KK N DITSI SNGGRV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFELEKG+VYREH++SPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV   YP +FVRIIGFDN RQVQCISF
Sbjct:    2 ASMISSSAVTTVSRASTVQSAAVAPFGGLKSMTGFPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISF 172          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 5.546e-71
Identity = 125/172 (72.67%), Postives = 145/172 (84.30%), Query Frame = 1
Query:   19 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            +SMISS+ V T +RAS  Q++ VAPF GLKS + FP  KK N DITSI SNGGRV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFELEKG+VYREH++SPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV   YP +FVRIIGFDN RQVQCISF
Sbjct:    2 ASMISSSAVTTVSRASRGQSAAVAPFGGLKSMTGFPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISF 172          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 7.243e-71
Identity = 122/174 (70.11%), Postives = 146/174 (83.91%), Query Frame = 1
Query:   13 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MASS++S+A    A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCISF
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSVSAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISF 173          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 1.614e-70
Identity = 126/174 (72.41%), Postives = 146/174 (83.91%), Query Frame = 1
Query:   13 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MASS++S+A  A    AS AQA+MVAPF GLKS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+ +GWIPC+EFELE  +VYRE+HRSPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SF
Sbjct:    1 MASSLMSNAITAVVG-ASGAQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSF 172          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 1.614e-70
Identity = 127/176 (72.16%), Postives = 146/176 (82.95%), Query Frame = 1
Query:   13 MASSMISSATVATANRASL--AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MASSM+S+A  A A  A+   AQA+MVAPF GLKS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+  GWIPC+EFELE  +VYRE+HRSPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SF
Sbjct:    1 MASSMMSNAATAVAVAATSGGAQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSF 175          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 3.595e-70
Identity = 121/174 (69.54%), Postives = 148/174 (85.06%), Query Frame = 1
Query:   13 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MASS++SSA VAT +R   AQASMVAPFTGLKS+  FPATKK N+DITS+ASNGGRVQCMKVWP   +K++ETLSYLPPL+ + L +++ YL+ + W+PCLEFE + G+VYREHH SPGYYDGRYWTMWKLPM+GCTD  QVL E+ E +KEYP++F+RIIGFD+ RQVQC+SF
Sbjct:    1 MASSVLSSAAVATVSRTP-AQASMVAPFTGLKSTVGFPATKK-NDDITSLASNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSF 172          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 4.695e-70
Identity = 122/171 (71.35%), Postives = 145/171 (84.80%), Query Frame = 1
Query:   22 SMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            ++ISSA V T NRA + QA++  PFTGLKSS+ FP TKK NNDITSI SNG RV CM+VWPP G KKFETLSYLPPL+DE LLKE+ YL+R GW+PC+EFELEKG+V+R+++ SPGYYDGRYWTMW+LP++G TDA QVLKEV E + EYP +F+RIIGFDN RQVQCISF
Sbjct:    2 ALISSAAVTTINRAPV-QANLATPFTGLKSSAGFPVTKK-NNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISF 170          
The following BLAST results are available for this feature:
BLAST of CX287129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS_STELP1.459e-7172.99Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MUSAC1.906e-7173.56Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_MESCR1.906e-7170.11Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_PEA4.246e-7172.67Ribulose bisphosphate carboxylase small chain 3A, ... [more]
RBS2_PEA5.546e-7172.67Ribulose bisphosphate carboxylase small chain 3C, ... [more]
RBS3_MESCR7.243e-7170.11Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3_AMAHP1.614e-7072.41Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_AMAHP1.614e-7072.16Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_SPIOL3.595e-7069.54Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_TRIRP4.695e-7071.35Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionC01005A07SK Veg1 Citrus clementina cDNA clone C01005A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287129 ID=CX287129; Name=CX287129; organism=Citrus clementina; type=EST; length=535bp
GAGCAAGTACCAATGGCTTCCTCAATGATCTCATCGGCCACCGTTGCCAC
CGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCG
GCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGAC
ATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTG
GCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCAC
TGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTATCCGCTCCGGC
TGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGA
GCACCACAGGTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGA
AGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTT
GGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATT
TGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCA
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