CX287129

Overview
NameCX287129
Unique NameCX287129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 9.789e-68
Identity = 121/174 (69.54%), Postives = 146/174 (83.91%), Query Frame = 1
Query:   13 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MASS    ++VATA   + AQASMVAPF GLKS+SAFP T+KT   ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R++++SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SF
Sbjct:    1 MASSATMLSSVATAACVAPAQASMVAPFVGLKSASAFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSF 173          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 1.670e-67
Identity = 121/174 (69.54%), Postives = 146/174 (83.91%), Query Frame = 1
Query:   13 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MASS    ++VATA  A+ AQASMVAPF GLKS+SAFP T+KT   ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R++++SPGYYDGRYWTMWKLPM+GCT A QV+KE  E +KEYP +F+R+IGFDN RQVQC+SF
Sbjct:    1 MASSATMLSSVATAACAAPAQASMVAPFVGLKSASAFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSF 173          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 1.670e-67
Identity = 120/174 (68.97%), Postives = 144/174 (82.76%), Query Frame = 1
Query:   13 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MASSM++S   A   RA  AQ++MVAPF GL+SS AFPAT+K N +++++ SNGG+V CM+VWPP GLKKFETLSYLPPLS E L KE+ YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF
Sbjct:    1 MASSMMAST--AAVARAGPAQSNMVAPFNGLRSSVAFPATRKANKNLSTLPSNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISF 171          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 2.848e-67
Identity = 120/174 (68.97%), Postives = 146/174 (83.91%), Query Frame = 1
Query:   13 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MA+S    ++VATA  A+ AQASMVAPF GLKS+SAFP T+K    ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R++++SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SF
Sbjct:    1 MAASSTMLSSVATAACAAPAQASMVAPFVGLKSTSAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSF 173          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 2.411e-66
Identity = 114/161 (70.81%), Postives = 140/161 (86.96%), Query Frame = 1
Query:   52 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            A  A++AQA+MVAPFTGLKS++AFP TKK N D +++ASNGGRVQCMKVWPP G K++ETLSYLP L++  L KE+ YL+R+ W+PCLEFELE G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISF 165          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 4.113e-66
Identity = 120/174 (68.97%), Postives = 141/174 (81.03%), Query Frame = 1
Query:   13 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MASSM++S   A A RA  AQ +MV PF   +SS  FPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF
Sbjct:    1 MASSMMASTAAAVA-RAGPAQTNMV-PFNACRSSVPFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISF 171          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 5.372e-66
Identity = 113/161 (70.19%), Postives = 139/161 (86.34%), Query Frame = 1
Query:   52 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            A  A++AQA+MVAPFTGLKS++AFP TKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE+ YL+R+ W+PCLEFELE G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISF 165          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 7.016e-66
Identity = 113/161 (70.19%), Postives = 139/161 (86.34%), Query Frame = 1
Query:   52 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            A  A++AQA+MVAPFTGLK+++AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE+ YL+R+ W+PCLEFELE G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF
Sbjct:    6 ATVATVAQANMVAPFTGLKANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISF 165          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 9.163e-66
Identity = 113/161 (70.19%), Postives = 139/161 (86.34%), Query Frame = 1
Query:   52 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            A  A++AQA+MVAPFTGLKS++AFP TKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE+ YL+R+ W+PCLEFELE G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISF 165          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.563e-65
Identity = 119/174 (68.39%), Postives = 141/174 (81.03%), Query Frame = 1
Query:   13 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MASSM++S   A A RA  AQ+SMV PF   +SS  FPAT+K NN+++++  NGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF
Sbjct:    1 MASSMMASTAAAVA-RAGPAQSSMV-PFNACRSSVPFPATRKANNNLSTLPGNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISF 171          
The following BLAST results are available for this feature:
BLAST of CX287129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS2_FRIAG9.789e-6869.54Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS5_FRIAG1.670e-6769.54Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS2_LEMGI1.670e-6768.97Ribulose bisphosphate carboxylase small chain SSU2... [more]
RBS1_FRIAG2.848e-6768.97Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS7_FLAPR2.411e-6670.81Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS4_LEMGI4.113e-6668.97Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS3_FLAPR5.372e-6670.19Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_FLAPR7.016e-6670.19Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS5_FLAPR9.163e-6670.19Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS3_LEMGI1.563e-6568.39Ribulose bisphosphate carboxylase small chain SSU4... [more]

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Properties
Property NameValue
Genbank descriptionC01005A07SK Veg1 Citrus clementina cDNA clone C01005A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287129 ID=CX287129; Name=CX287129; organism=Citrus clementina; type=EST; length=535bp
GAGCAAGTACCAATGGCTTCCTCAATGATCTCATCGGCCACCGTTGCCAC
CGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCG
GCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGAC
ATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTG
GCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCAC
TGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTATCCGCTCCGGC
TGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGA
GCACCACAGGTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGA
AGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTT
GGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATT
TGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCA
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