CX287129

Overview
NameCX287129
Unique NameCX287129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.928e-31
Identity = 63/121 (52.07%), Postives = 82/121 (67.77%), Query Frame = 1
Query:  190 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF
Sbjct:  135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 255          

HSP 2 Score: 135.191 bits (339), Expect = 1.928e-31
Identity = 63/121 (52.07%), Postives = 82/121 (67.77%), Query Frame = 1
Query:  190 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF
Sbjct:  279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 399          

HSP 3 Score: 135.191 bits (339), Expect = 1.928e-31
Identity = 63/121 (52.07%), Postives = 82/121 (67.77%), Query Frame = 1
Query:  190 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF
Sbjct:  566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 686          

HSP 4 Score: 135.191 bits (339), Expect = 1.928e-31
Identity = 63/121 (52.07%), Postives = 82/121 (67.77%), Query Frame = 1
Query:  190 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF
Sbjct:  709 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 829          

HSP 5 Score: 135.191 bits (339), Expect = 1.928e-31
Identity = 63/121 (52.07%), Postives = 82/121 (67.77%), Query Frame = 1
Query:  190 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF
Sbjct:  997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 1117          

HSP 6 Score: 135.191 bits (339), Expect = 1.928e-31
Identity = 63/121 (52.07%), Postives = 82/121 (67.77%), Query Frame = 1
Query:  190 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF
Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 1261          

HSP 7 Score: 133.265 bits (334), Expect = 7.328e-31
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1
Query:  190 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD  YWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF
Sbjct:  422 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 542          

HSP 8 Score: 130.954 bits (328), Expect = 3.637e-30
Identity = 63/121 (52.07%), Postives = 82/121 (67.77%), Query Frame = 1
Query:  190 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR + FD+ +QVQ ISF
Sbjct:  854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVISF 973          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.928e-31
Identity = 58/120 (48.33%), Postives = 81/120 (67.50%), Query Frame = 1
Query:  193 KVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFE------LEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            KVW P   K++ET SYLPPL+++ + +++ Y+I +GW PCLEF       +      R    S GYYD RYWTMWKLPM+GCTD +QVL+EV   Q  +P+ ++R++ FDN +QVQC+ F
Sbjct:   30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGF 149          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.928e-31
Identity = 75/180 (41.67%), Postives = 100/180 (55.56%), Query Frame = 1
Query:   13 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEF-ELEKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            +A S +S+A    A        S V P   LK     PA K       + A+       M VW P   K FET SYLPPL+DE +  ++ Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN++QVQ + F
Sbjct:    5 IAKSSVSAAVARPAR-------SSVRPMAALK-----PAVKAAPVAAPAQANQ------MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGF 166          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.805e-29
Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = 1
Query:  322 ELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            ELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISF
Sbjct:    1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISF 71          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.859e-29
Identity = 64/146 (43.84%), Postives = 85/146 (58.22%), Query Frame = 1
Query:  121 FPATKKTNNDITSIASNGGRVQC--MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            FP   K N      ASN    +C  M VW P   K FET SYLPPL+DE + K++ Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F
Sbjct:   22 FPRATKNNK---GFASNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGF 164          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.806e-28
Identity = 63/151 (41.72%), Postives = 84/151 (55.63%), Query Frame = 1
Query:  100 GLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            G    SA P          + A N  R   M VW P   K FET SYLPPL+DE + K++ Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F
Sbjct:   15 GCTKPSAVPKVSINRKGFLNTAMNKKRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGF 163          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.583e-28
Identity = 65/165 (39.39%), Postives = 91/165 (55.15%), Query Frame = 1
Query:   61 ASLAQASMVAPFTGLKSSSAFPATKKTNNDITS-IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            A++   ++V    G   SS+ P          S +A    R   M VW P   K FET SYLPPL+DE + K++ Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F
Sbjct:    3 AAMMNKTIVVSKDGCARSSSIPKVATNKMGFASAVAMKKSRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGF 165          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.293e-27
Identity = 58/131 (44.27%), Postives = 82/131 (62.60%), Query Frame = 1
Query:  166 SNG--GRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFE-LEKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            SNG   + + M VW P   K FET SYLPPL+D+ + K++ Y++R+ W PCLEF   ++ +V  ++    G     Y D RYWTMWKLPM+GC D +QVL E+    K +P +++R++ FD  RQVQ   F
Sbjct:   26 SNGTISKSRAMMVWEPFNNKFFETFSYLPPLTDDQITKQVDYILRNNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRLVCFDANRQVQISGF 156          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.206e-27
Identity = 56/121 (46.28%), Postives = 77/121 (63.64%), Query Frame = 1
Query:  190 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            M VW P   K FET SYLPPL+DE + K++ Y++ + W PCLEF   ++ +   E+  + G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGF 163          
BLAST of CX287129 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.915e-27
Identity = 56/121 (46.28%), Postives = 77/121 (63.64%), Query Frame = 1
Query:  190 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 534
            M VW P   K FET S+LPPL+DE + K++ Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTDA+QVL E+    K +P +++R++ FD  RQVQ   F
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGF 163          
The following BLAST results are available for this feature:
BLAST of CX287129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS_EUGGR1.928e-3152.07Ribulose bisphosphate carboxylase small chains, ch... [more]
RBS_CHLMO1.928e-3148.33Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_CHLRE1.928e-3141.67Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_SINAL1.805e-2977.46Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS3_ACECL6.859e-2943.84Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS4_ACECL5.806e-2841.72Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS5_ACECL7.583e-2839.39Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS_BATOE1.293e-2744.27Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_ACECL2.206e-2746.28Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS3_ACEAT4.915e-2746.28Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionC01005A07SK Veg1 Citrus clementina cDNA clone C01005A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287129 ID=CX287129; Name=CX287129; organism=Citrus clementina; type=EST; length=535bp
GAGCAAGTACCAATGGCTTCCTCAATGATCTCATCGGCCACCGTTGCCAC
CGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCG
GCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGAC
ATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTG
GCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCAC
TGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTATCCGCTCCGGC
TGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGA
GCACCACAGGTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGA
AGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTT
GGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATT
TGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCA
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