CX287130

Overview
NameCX287130
Unique NameCX287130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDHM1_ARATH (Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.583e-43
Identity = 83/123 (67.48%), Postives = 98/123 (79.67%), Query Frame = 2
Query:  158 AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            + G  P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G   L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK LC  IAK CP A++N+I
Sbjct:   23 SSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPHALINMI 145          
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDHM_FRAAN (Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.112e-43
Identity = 83/118 (70.34%), Postives = 100/118 (84.75%), Query Frame = 2
Query:  173 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            P  KVAVLGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+SH++T + V+G+ G++QL +AL G D+VIIPAGVPRKPGMTRDDLFNINAGIV++L   IAK CP AI+N+I
Sbjct:   25 PQRKVAVLGAAGGIGQPLALLMKLNPLVSQLSLYDIAGTPGVAADVSHINTRSEVKGYAGEEQLGEALEGCDVVIIPAGVPRKPGMTRDDLFNINAGIVRSLTAAIAKYCPHAIINMI 142          
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDHM_BRANA (Malate dehydrogenase, mitochondrial OS=Brassica napus GN=MDH PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 3.962e-42
Identity = 83/123 (67.48%), Postives = 97/123 (78.86%), Query Frame = 2
Query:  158 AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            + G  P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G   L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK L   IAK CP A+VN+I
Sbjct:   23 SSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLWSAIAKYCPHALVNMI 145          
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDHM2_ARATH (Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.721e-41
Identity = 80/118 (67.80%), Postives = 95/118 (80.51%), Query Frame = 2
Query:  173 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            P  KV +LGAAGGIGQPL++LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G   L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK L   IAK CP+A+VN+I
Sbjct:   28 PDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLSIAIAKYCPQALVNMI 145          
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDHP_ARATH (Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.035e-38
Identity = 74/116 (63.79%), Postives = 94/116 (81.03%), Query Frame = 2
Query:  179 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            +KVAVLGAAGGIGQPL++L+K++PLVS LHLYD+ N  GV AD+SH +T + VR F G  +L D L  +++V+IPAGVPRKPGMTRDDLFNINA IVKTL E +A+ CP A +++I
Sbjct:   83 YKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTGPSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAENCPNAFIHII 198          
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDHM_PONAB (Malate dehydrogenase, mitochondrial OS=Pongo abelii GN=MDH2 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.722e-37
Identity = 74/115 (64.35%), Postives = 94/115 (81.74%), Query Frame = 2
Query:  182 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +QL D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A++ +I
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTSACAQHCPEAMICVI 140          
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDHM_BOVIN (Malate dehydrogenase, mitochondrial OS=Bos taurus GN=MDH2 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.722e-37
Identity = 74/115 (64.35%), Postives = 94/115 (81.74%), Query Frame = 2
Query:  182 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +QL D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A++ +I
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICII 140          
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDHM_HUMAN (Malate dehydrogenase, mitochondrial OS=Homo sapiens GN=MDH2 PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.250e-37
Identity = 74/115 (64.35%), Postives = 94/115 (81.74%), Query Frame = 2
Query:  182 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +QL D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A++ +I
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVI 140          
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDHM_PIG (Malate dehydrogenase, mitochondrial OS=Sus scrofa GN=MDH2 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 2.938e-37
Identity = 74/115 (64.35%), Postives = 93/115 (80.87%), Query Frame = 2
Query:  182 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +QL D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A++ +I
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII 140          
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDHM_MOUSE (Malate dehydrogenase, mitochondrial OS=Mus musculus GN=Mdh2 PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 2.938e-37
Identity = 75/115 (65.22%), Postives = 94/115 (81.74%), Query Frame = 2
Query:  182 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +QL D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A+V +I
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMVCII 140          
The following BLAST results are available for this feature:
BLAST of CX287130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
MDHM1_ARATH3.583e-4367.48Malate dehydrogenase 1, mitochondrial OS=Arabidops... [more]
MDHM_FRAAN6.112e-4370.34Malate dehydrogenase, mitochondrial OS=Fragaria an... [more]
MDHM_BRANA3.962e-4267.48Malate dehydrogenase, mitochondrial OS=Brassica na... [more]
MDHM2_ARATH5.721e-4167.80Malate dehydrogenase 2, mitochondrial OS=Arabidops... [more]
MDHP_ARATH2.035e-3863.79Malate dehydrogenase, chloroplastic OS=Arabidopsis... [more]
MDHM_PONAB1.722e-3764.35Malate dehydrogenase, mitochondrial OS=Pongo abeli... [more]
MDHM_BOVIN1.722e-3764.35Malate dehydrogenase, mitochondrial OS=Bos taurus ... [more]
MDHM_HUMAN2.250e-3764.35Malate dehydrogenase, mitochondrial OS=Homo sapien... [more]
MDHM_PIG2.938e-3764.35Malate dehydrogenase, mitochondrial OS=Sus scrofa ... [more]
MDHM_MOUSE2.938e-3765.22Malate dehydrogenase, mitochondrial OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionC01005A08SK Veg1 Citrus clementina cDNA clone C01005A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287130 ID=CX287130; Name=CX287130; organism=Citrus clementina; type=EST; length=527bp
GTTTGTTTTATCACAACTAAGTCTCCAGAAACTCAGAACCATGCAGCAGC
CAACTTCAGGAGCAAATCAACGCATTGCGAGAATCGCTGCTCATCTCCAT
CCACCAACTCTCCAGATAGAGGGAGAGAGTTCGGGTTTGGGGCGGATGGA
TTGCAGGGCAAAAGGCGGGTCGCCCGGATTCAAGGTGGCTGTATTGGGAG
CTGCTGGAGGGATTGGACAGCCTCTGGCTATGTTGATGAAGATCAATCCC
TTGGTTTCAGTTCTTCATCTTTATGATGTTGTCAATACTCCTGGGGTTAC
TGCCGATATCAGTCACATGGATACAAATGCTGTGGTACGAGGATTTTTGG
GGCAACAGCAATTGGAGGATGCCCTCACGGGCATGGACATTGTAATCATT
CCCGCTGGTGTTCCTAGGAAACCTGGAATGACTAGGGATGATCTGTTCAA
TATCAATGCCGGAATTGTTAAGACCCTTTGTGAAGGAATAGCTAAGTGCT
GTCCAAAAGCTATTGTGAACTTGATTA
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