CX287140

Overview
NameCX287140
Unique NameCX287140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.224e-43
Identity = 94/172 (54.65%), Postives = 119/172 (69.19%), Query Frame = 2
Query:  116 RLDVAEFAGLRANAGATYATGARDASFF-------DAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 610
            R   A+F+G++    ++    A+  S F       DA   +++  VAA   P  K     ++VAINGFGRIGRNF+RCW GR DS ++VV +ND+ GVK ASHLLKYDS+LGTF ADV     +TISV+GK IK+VSNR+PLQLPW E+ IDIV+E TGVFVD PGAGKHI+
Sbjct:   24 RSTFAQFSGMKKVNQSSRLQPAQSGSAFGGYSDANDAFYTRVSGIVAATFGPTMK-----VRVAINGFGRIGRNFIRCWAGRSDSNMEVVCINDTSGVKTASHLLKYDSILGTFDADVS-AGEDTISVNGKTIKIVSNRNPLQLPWKEMNIDIVVEATGVFVDAPGAGKHIE 189          
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.904e-43
Identity = 99/189 (52.38%), Postives = 126/189 (66.67%), Query Frame = 2
Query:   80 TTHSFPTQCSTKRLDVAEFAGLR----------ANAGATYATGARDAS--FFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 610
            +T S    CS  R   A+F+GL+          A  G+ +  G  DA+  FF+AV     P   + +  +K      ++VAINGFGRIGRNF+RCW GR DS +DVV +ND+ GVK ASHLLKYDS+LGTF +DV +   ++I+VDGK IKVVSNR+PL+LPW E+ IDIV+E TGVFVD  GAGKHIQ
Sbjct:   12 STSSKSAVCSG-RSSFAQFSGLKKVNNTARLQTAEQGSAFG-GVSDANDAFFNAVNTMGAPARTSNAPSMK------VRVAINGFGRIGRNFIRCWAGRTDSNMDVVCINDTSGVKTASHLLKYDSILGTFDSDV-VAGEDSITVDGKTIKVVSNRNPLELPWKEMEIDIVVEATGVFVDAVGAGKHIQ 191          
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.649e-38
Identity = 76/107 (71.03%), Postives = 90/107 (84.11%), Query Frame = 2
Query:  290 NGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 610
            NGFGRIGRNFLRC   R++S L+V+ +NDSGGVK ASHLLKYDS LG F ADVKIVD+  ISV+GK I+VVS+RDP +LPW E+ ID+VIEGTGVF+D PGA KHI+
Sbjct:    1 NGFGRIGRNFLRCLETRQNSLLEVIAINDSGGVKQASHLLKYDSTLGKFDADVKIVDDGHISVNGKSIRVVSSRDPTKLPWGEMEIDLVIEGTGVFIDTPGASKHIE 107          
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.352e-32
Identity = 67/111 (60.36%), Postives = 84/111 (75.68%), Query Frame = 2
Query:  278 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 610
            +VAINGFGRIGRNFLRCW GR DS L+VV +ND+   +  +HLL+YDS+LG   AD+   D  +I+V+GK IK VS+R+PL LPWAE  +D+VIE TGVFV   GA KH+Q
Sbjct:    3 RVAINGFGRIGRNFLRCWLGRTDSQLEVVGINDTSDPRTNAHLLRYDSMLGKLDADIS-ADENSITVNGKTIKCVSDRNPLNLPWAEWNVDLVIEATGVFVTHEGATKHVQ 112          
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.317e-29
Identity = 61/111 (54.95%), Postives = 81/111 (72.97%), Query Frame = 2
Query:  275 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHI 607
            ++VAINGFGRIGRNF RCW GR+++ +++V VND+   +  +HLLKYDS+LG  K      D+ +I+V+GK IK VS+R+P  LPW E  ID++IE TGVFV   GA KHI
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENTNIELVAVNDTSDPRTNAHLLKYDSMLGKLKNVDITADDNSITVNGKTIKCVSDRNPENLPWKEWEIDLIIEATGVFVSKEGATKHI 112          
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.547e-28
Identity = 60/111 (54.05%), Postives = 80/111 (72.07%), Query Frame = 2
Query:  275 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHI 607
            ++VAINGFGRIGRNF RCW GR++S +++V VND+   +  +HLLKYDS+LG  K      D+ +I+V+GK IK VS+R+P  LPW E  ID++IE TGVF    GA KH+
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENSNIELVAVNDTSDPRTNAHLLKYDSMLGKLKNVDITADDNSITVNGKTIKCVSDRNPENLPWKEWEIDLIIESTGVFTSKEGALKHV 112          
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.448e-26
Identity = 59/112 (52.68%), Postives = 80/112 (71.43%), Query Frame = 2
Query:  275 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 610
            +KV INGFGRIGR+F R   GR++  +++V +ND    K+ +HLLKYDS+ G FK  V+  D ++I VDGK IKV + +DP Q+PW +LG+D+VIE TGVF D   A KH+Q
Sbjct:    3 IKVGINGFGRIGRSFFRASWGREE--IEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEAKD-DSIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQ 111          
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3P_STRCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces coelicolor GN=gap PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.091e-25
Identity = 57/111 (51.35%), Postives = 77/111 (69.37%), Query Frame = 2
Query:  275 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHI 607
            ++V INGFGRIGRN+ R     + + +++V VND G     +HLLKYD++LG  KA+V   + +TI+VDGK IKV+S R+P  +PW ELG+DIVIE TG+F     A KHI
Sbjct:    3 IRVGINGFGRIGRNYFRALL-EQGADIEIVAVNDLGDTATTAHLLKYDTILGRLKAEVSHTE-DTITVDGKTIKVLSERNPADIPWGELGVDIVIESTGIFTKKADAEKHI 111          
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3P_STRAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces arenae GN=gap PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.295e-22
Identity = 54/111 (48.65%), Postives = 70/111 (63.06%), Query Frame = 2
Query:  275 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHI 607
            +++ INGFGRIGRN  R    R  S L++V VND G V   +HLL YDS+LG F  +V   +   I V  + IKV++ RDP  LPW +LG+DIVIE TG+F D   A  H+
Sbjct:    3 VRIGINGFGRIGRNVFRAAAARS-SELEIVAVNDLGDVPTMAHLLAYDSILGRFPEEVT-AEPGAIRVGDRTIKVLAERDPGALPWGDLGVDIVIESTGIFTDAAKARSHV 111          
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3P1_BACCE (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus cereus GN=gap1 PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 6.295e-22
Identity = 52/110 (47.27%), Postives = 73/110 (66.36%), Query Frame = 2
Query:  278 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHI 607
            K+ INGFGRIGRN  R      +S ++VV +ND    K  +HLLKYD++ GT  A+V   +N +I V+GK IKV++ RDP QLPW++ G+++V+E TG F     A KH+
Sbjct:    3 KIGINGFGRIGRNVFRA--ALNNSEVEVVAINDLTDAKTLAHLLKYDTVHGTLNAEVSANEN-SIVVNGKEIKVIAERDPAQLPWSDYGVEVVVESTGRFTKKSDAEKHL 109          
The following BLAST results are available for this feature:
BLAST of CX287140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
G3PA_CHOCR2.224e-4354.65Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_GRAVE2.904e-4352.38Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_SCEVA1.649e-3871.03Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P2_SYNY31.352e-3260.36Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3P2_ANASP5.317e-2954.95Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANAVT1.547e-2854.05Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P_AQUAE1.448e-2652.68Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]
G3P_STRCO2.091e-2551.35Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRAE6.295e-2248.65Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P1_BACCE6.295e-2247.27Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionC01005B06SK Veg1 Citrus clementina cDNA clone C01005B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287140 ID=CX287140; Name=CX287140; organism=Citrus clementina; type=EST; length=612bp
AACTAAGCCACAGGCCATGGCCAGTCACTCAGCTCTTGCTCCCTCAAGAA
TCCCGGCCATCACTAGGATTCCATCCAAGACTACTCACTCTTTTCCCACT
CAATGCTCCACCAAGAGGCTGGATGTGGCTGAATTCGCTGGCCTTCGAGC
AAATGCAGGCGCGACATACGCCACTGGTGCTAGAGATGCATCCTTCTTTG
ATGCTGTGACTGCTCAACTTACTCCTAAGGTTGCAGCAGGATCAGTTCCT
GTAAAGAAAGAAACCGTGGCCAAATTGAAGGTGGCAATTAATGGATTTGG
ACGTATTGGCAGGAACTTCCTCCGATGCTGGCACGGCAGGAAAGACTCAC
CCCTTGATGTTGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCA
CACCTTCTAAAATATGACTCATTGCTTGGAACTTTTAAAGCAGACGTGAA
AATAGTGGACAACGAGACCATCTCTGTCGATGGTAAGCTCATCAAGGTTG
TCTCTAACAGGGACCCTCTCCAGCTCCCTTGGGCTGAGCTCGGAATTGAC
ATCGTTATTGAGGGAACAGGAGTTTTTGTGGACGGCCCTGGTGCTGGAAA
GCACATCCAAGC
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