CX287205

Overview
NameCX287205
Unique NameCX287205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_LEPIN (Glycine dehydrogenase [decarboxylating] OS=Leptospira interrogans GN=gcvP PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.005e-40
Identity = 82/131 (62.60%), Postives = 101/131 (77.10%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            LP H +V+             G ++AAPWGSA I+ IS+ YIA+MGS+GLT A++ +ILNANY+AKRLEK YP+L++G NG VAHE I+DLR  K +AGIE EDVAKRL+DYGFH PTMS+PVPGTLMIEP
Sbjct:  739 LPGHVLVNNA------TGNEHGAVSAAPWGSASIVLISWVYIALMGSEGLTNATRNSILNANYIAKRLEKVYPVLYKGKNGFVAHECILDLRPFKKSAGIEVEDVAKRLIDYGFHAPTMSFPVPGTLMIEP 863          
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_SYNY3 (Glycine dehydrogenase [decarboxylating] OS=Synechocystis sp. (strain PCC 6803) GN=gcvP PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.618e-40
Identity = 84/131 (64.12%), Postives = 104/131 (79.39%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            LP   + ST  + A ++S  +G I+AAP+GSA IL IS+ YIAMMG +GLT+A+++AIL+ANYMAKRLE +YPILFRG N  VAHE I+DLR LK  A IE EDVAKRLMD+GFH PT+SWPV GT+M+EP
Sbjct:  752 LPRTSLNSTAELQAEDQS--IGMISAAPYGSASILVISWMYIAMMGPQGLTKATEVAILSANYMAKRLENYYPILFRGNNELVAHECILDLRPLKKQAAIEVEDVAKRLMDFGFHAPTVSWPVLGTMMVEP 880          
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_LEPIC (Glycine dehydrogenase [decarboxylating] OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gcvP PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.618e-40
Identity = 78/110 (70.91%), Postives = 95/110 (86.36%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            G ++AAPWGSA I+ IS+ YIA+MGS+GLT A++ +ILNANY+AKRLEK YP+L++G NG VAHE I+DLR  K +AGIE EDVAKRL+DYGFH PTMS+PVPGTLMIEP
Sbjct:  754 GAVSAAPWGSASIVLISWVYIALMGSEGLTNATRNSILNANYIAKRLEKVYPVLYKGKNGFVAHECILDLRPFKKSAGIEVEDVAKRLIDYGFHAPTMSFPVPGTLMIEP 863          
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_LEPBL (Glycine dehydrogenase [decarboxylating] OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=gcvP PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.617e-40
Identity = 77/110 (70.00%), Postives = 95/110 (86.36%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            G ++AAPWGSA I+ IS+ YIA+MGS+GLT A++I+ILNANY+AKRLEK YP+L++G NG VAHE I+D+R  K +A IE EDVAKRL+DYGFH PTMS+PVPGTLMIEP
Sbjct:  754 GAVSAAPWGSASIVLISWIYIALMGSEGLTNATRISILNANYIAKRLEKAYPVLYKGKNGFVAHECILDVRPFKKSAEIEVEDVAKRLIDYGFHAPTMSFPVPGTLMIEP 863          
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_LEPBJ (Glycine dehydrogenase [decarboxylating] OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=gcvP PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.617e-40
Identity = 77/110 (70.00%), Postives = 95/110 (86.36%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            G ++AAPWGSA I+ IS+ YIA+MGS+GLT A++I+ILNANY+AKRLEK YP+L++G NG VAHE I+D+R  K +A IE EDVAKRL+DYGFH PTMS+PVPGTLMIEP
Sbjct:  754 GAVSAAPWGSASIVLISWIYIALMGSEGLTNATRISILNANYIAKRLEKAYPVLYKGKNGFVAHECILDVRPFKKSAEIEVEDVAKRLIDYGFHAPTMSFPVPGTLMIEP 863          
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_DICDI (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Dictyostelium discoideum GN=gcvP PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.617e-40
Identity = 78/131 (59.54%), Postives = 96/131 (73.28%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            LP H VV   G       + +  ++A PWGS+ ILPI+Y Y+ +MG +GL +A+++AILNANYMA RL+ HY IL+ G +G VAHEFI+DLR  K +AGIE EDVAKRL D  FHGPTMSWPVP TLMIEP
Sbjct:  768 LPGHSVVKGVG-----GERAMSAVSAGPWGSSSILPITYVYLKLMGGQGLKKATQVAILNANYMASRLKDHYKILYTGSHGLVAHEFIIDLRMFKESAGIEAEDVAKRLQDMNFHGPTMSWPVPNTLMIEP 893          
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_HAHCH (Glycine dehydrogenase [decarboxylating] OS=Hahella chejuensis (strain KCTC 2396) GN=gcvP PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.948e-40
Identity = 75/111 (67.57%), Postives = 93/111 (83.78%), Query Frame = 1
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            +  I+AAPWGSA ILPIS+TYI MMG +GLTEA+K AILNANY+AKRLE HYP+L+ G  G VAHE I+D+R  K++ G+  +D+AKRL+D+GFH PTMS+PVPGTLMIEP
Sbjct:  749 IAPISAAPWGSAGILPISWTYIRMMGGEGLTEATKSAILNANYIAKRLEPHYPVLYTGSQGFVAHECIIDVRPFKDSCGVTVDDIAKRLIDFGFHAPTMSFPVPGTLMIEP 859          
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_BURCM (Glycine dehydrogenase [decarboxylating] OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=gcvP PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.948e-40
Identity = 76/111 (68.47%), Postives = 93/111 (83.78%), Query Frame = 1
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K T+GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EP
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKETSGISVDDVAKRLMDYGFHAPTMSFPVPGTLMVEP 874          
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_BURCJ (Glycine dehydrogenase [decarboxylating] OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=gcvP PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.948e-40
Identity = 76/111 (68.47%), Postives = 93/111 (83.78%), Query Frame = 1
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K T+GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EP
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKETSGISVDDVAKRLMDYGFHAPTMSFPVPGTLMVEP 874          
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_BURCH (Glycine dehydrogenase [decarboxylating] OS=Burkholderia cenocepacia (strain HI2424) GN=gcvP PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.948e-40
Identity = 76/111 (68.47%), Postives = 93/111 (83.78%), Query Frame = 1
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K T+GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EP
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKETSGISVDDVAKRLMDYGFHAPTMSFPVPGTLMVEP 874          
The following BLAST results are available for this feature:
BLAST of CX287205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 351
Match NameE-valueIdentityDescription
GCSP_LEPIN2.005e-4062.60Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_SYNY32.618e-4064.12Glycine dehydrogenase [decarboxylating] OS=Synecho... [more]
GCSP_LEPIC2.618e-4070.91Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_LEPBL7.617e-4070.00Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_LEPBJ7.617e-4070.00Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_DICDI7.617e-4059.54Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_HAHCH9.948e-4067.57Glycine dehydrogenase [decarboxylating] OS=Hahella... [more]
GCSP_BURCM9.948e-4068.47Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURCJ9.948e-4068.47Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURCH9.948e-4068.47Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionC01005H05SK Veg1 Citrus clementina cDNA clone C01005H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287205 ID=CX287205; Name=CX287205; organism=Citrus clementina; type=EST; length=394bp
CTGCCTTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCATGGACC
AACAATGTCATGGCCTGTTCCAGGCACACTTATGATTGAACCAA
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