CX287205

Overview
NameCX287205
Unique NameCX287205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_PSEU2 (Glycine dehydrogenase [decarboxylating] OS=Pseudomonas syringae pv. syringae (strain B728a) GN=gcvP PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.074e-37
Identity = 71/110 (64.55%), Postives = 93/110 (84.55%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            G + AAP+GSA ILPI++ YI MMG +GL  AS++AILNANY+++RLE+HYP+L+ G NG VAHE I+DLR +K+++GI  +DVAKRL+D+GFH PTMS+PV GTLMIEP
Sbjct:  743 GAVCAAPFGSASILPITWMYIRMMGGEGLKRASQLAILNANYISRRLEEHYPVLYTGSNGLVAHECILDLRPIKDSSGISVDDVAKRLIDFGFHAPTMSFPVAGTLMIEP 852          
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_BRASB (Glycine dehydrogenase [decarboxylating] OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=gcvP PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.074e-37
Identity = 74/131 (56.49%), Postives = 94/131 (71.76%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            LP HP              P+G ++AAP+GSA IL ISY Y+ +MG +GLT A++IAILNANY+A RL+ H+P+L+R   G VAHE I+D R LK T G+  +D+AKRL+DYGFH PTMS+PV GTLMIEP
Sbjct:  728 LPGHPATDAA------TPSPVGPVSAAPYGSASILTISYIYMLLMGGEGLTRATEIAILNANYVAARLDPHFPVLYRNERGRVAHECIIDPRPLKQTCGVTVDDIAKRLIDYGFHAPTMSFPVAGTLMIEP 852          
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP1_PSEPF (Glycine dehydrogenase [decarboxylating] 1 OS=Pseudomonas fluorescens (strain Pf0-1) GN=gcvP1 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.074e-37
Identity = 72/110 (65.45%), Postives = 92/110 (83.64%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            G + AAP+GSA ILPI++ YI MMG  GL  AS++AILNANY+++RLE+HYP+L+ G NG VAHE I+DLR LK+++GI  +DVAKRL+D+GFH PTMS+PV GTLMIEP
Sbjct:  741 GAVCAAPFGSASILPITWMYIRMMGGAGLKRASQLAILNANYISRRLEEHYPVLYTGSNGLVAHECILDLRPLKDSSGISVDDVAKRLIDFGFHAPTMSFPVAGTLMIEP 850          
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP2_COLP3 (Glycine dehydrogenase [decarboxylating] 2 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gcvP2 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.709e-37
Identity = 77/131 (58.78%), Postives = 96/131 (73.28%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            LP H V +T           +G ++A   GSA ILPIS+ YIA+MG++GL  A+++AILNANY+ ++L  HYPILFRG  G VAHE I+DLR LK ++GI  EDVAKRLMD+GFH PTMS+PV GTLMIEP
Sbjct:  732 LPGHSVTNT-----------VGAVSATALGSASILPISWAYIALMGAEGLKSATELAILNANYIMEKLSPHYPILFRGKQGRVAHECIIDLRPLKESSGISEEDVAKRLMDFGFHAPTMSFPVAGTLMIEP 851          
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_PELUB (Glycine dehydrogenase [decarboxylating] OS=Pelagibacter ubique GN=gcvP PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.538e-37
Identity = 72/131 (54.96%), Postives = 98/131 (74.81%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            LP H V+   G         +G ++AAPWGS+ IL IS+ YI MMGS+GL +AS++AILNANY+A +L+  +PIL++G +G VAHE I+D+R +K+  GI  ED+AKRL+D+G+H PTMSWPV GT+MIEP
Sbjct:  722 LPKHSVIKDCG-----PVTGMGAVSAAPWGSSSILSISWMYIKMMGSEGLRKASQVAILNANYIAHKLKDSFPILYKGKSGNVAHECIIDIRTIKSETGITEEDIAKRLIDFGYHAPTMSWPVAGTMMIEP 847          
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_RALPJ (Glycine dehydrogenase [decarboxylating] OS=Ralstonia pickettii (strain 12J) GN=gcvP PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.621e-37
Identity = 72/116 (62.07%), Postives = 95/116 (81.90%), Query Frame = 1
Query:   46 EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            + SQ +G ++A+ +GSA ILPIS+ YIAMMG+ GLT A++ AIL+ANY+AKRL  +YP+L+ G +G VAHE I+D+R L+  +GI  ED+AKRLMD+GFH PTMS+PVPGTLMIEP
Sbjct:  761 DASQNIGNVSASAFGSASILPISWMYIAMMGAAGLTAATETAILSANYVAKRLAPYYPVLYTGAHGLVAHECILDIRPLQKESGISNEDIAKRLMDFGFHAPTMSFPVPGTLMIEP 876          
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_SYNS9 (Glycine dehydrogenase [decarboxylating] OS=Synechococcus sp. (strain CC9902) GN=gcvP PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.035e-37
Identity = 72/131 (54.96%), Postives = 96/131 (73.28%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            LP HP  +       + +  +G ++AA  GSA ILPIS+ Y+ MMG+  L +AS +A+L+ANY+A RL+ H+P+LFRG  G VAHE I+DLR LK  AGI+ +D+AKRLMDYGFH PT+SWPV GT+M+EP
Sbjct:  731 LPGHPFEN-------QTASAIGPVSAAALGSASILPISWMYLRMMGADALRQASAVALLSANYLAHRLDDHFPVLFRGATGRVAHECILDLRPLKRDAGIDVDDIAKRLMDYGFHAPTVSWPVAGTVMVEP 854          
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_PECCP (Glycine dehydrogenase [decarboxylating] OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.035e-37
Identity = 74/131 (56.49%), Postives = 99/131 (75.57%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL++ YP+L+ G +G VAHE I+D+R LK + GI   D+AKRL+DYGFH PTMS+PV GTLM+EP
Sbjct:  734 VPGHQVVKIDGVLTEQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKQASQMAILNANYIATRLQQAYPVLYTGRDGRVAHECILDIRPLKESTGISEMDIAKRLIDYGFHAPTMSFPVAGTLMVEP 859          
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_ERWCT (Glycine dehydrogenase [decarboxylating] OS=Erwinia carotovora subsp. atroseptica GN=gcvP PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.035e-37
Identity = 74/131 (56.49%), Postives = 99/131 (75.57%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL++ YP+L+ G +G VAHE I+D+R LK + GI   D+AKRL+DYGFH PTMS+PV GTLM+EP
Sbjct:  734 VPGHQVVKIDGVLTEQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKQASQMAILNANYIATRLQQAYPVLYTGRDGRVAHECILDIRPLKESTGISEMDIAKRLIDYGFHAPTMSFPVAGTLMVEP 859          
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_SCHPO (Putative glycine dehydrogenase [decarboxylating], mitochondrial OS=Schizosaccharomyces pombe GN=SPAC13G6.06c PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.882e-37
Identity = 73/131 (55.73%), Postives = 93/131 (70.99%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            LPSHPVVS GG         + +++++P+GSA ILPIS+ Y+ MMG  GL +ASK A+LNANYMAKRL  HY +++   N   AHEFI+D R  K TAG++  D+AKRL DY FH PT+SWP+  TLMIEP
Sbjct:  795 LPSHPVVSCGG------KNGITSVSSSPFGSAGILPISWAYMRMMGLAGLRDASKAALLNANYMAKRLSSHYKLVYTNKNNLCAHEFILDAREFKATAGVDATDIAKRLQDYSFHAPTLSWPIANTLMIEP 919          
The following BLAST results are available for this feature:
BLAST of CX287205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 351
Match NameE-valueIdentityDescription
GCSP_PSEU22.074e-3764.55Glycine dehydrogenase [decarboxylating] OS=Pseudom... [more]
GCSP_BRASB2.074e-3756.49Glycine dehydrogenase [decarboxylating] OS=Bradyrh... [more]
GCSP1_PSEPF2.074e-3765.45Glycine dehydrogenase [decarboxylating] 1 OS=Pseud... [more]
GCSP2_COLP32.709e-3758.78Glycine dehydrogenase [decarboxylating] 2 OS=Colwe... [more]
GCSP_PELUB3.538e-3754.96Glycine dehydrogenase [decarboxylating] OS=Pelagib... [more]
GCSP_RALPJ4.621e-3762.07Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]
GCSP_SYNS96.035e-3754.96Glycine dehydrogenase [decarboxylating] OS=Synecho... [more]
GCSP_PECCP6.035e-3756.49Glycine dehydrogenase [decarboxylating] OS=Pectoba... [more]
GCSP_ERWCT6.035e-3756.49Glycine dehydrogenase [decarboxylating] OS=Erwinia... [more]
GCSP_SCHPO7.882e-3755.73Putative glycine dehydrogenase [decarboxylating], ... [more]

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Properties
Property NameValue
Genbank descriptionC01005H05SK Veg1 Citrus clementina cDNA clone C01005H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287205 ID=CX287205; Name=CX287205; organism=Citrus clementina; type=EST; length=394bp
CTGCCTTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCATGGACC
AACAATGTCATGGCCTGTTCCAGGCACACTTATGATTGAACCAA
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